Evidence map›Paper›PMID 29559536›Full record

ArticleG3 (Bethesda, Md.)2018

Historical Datasets Support Genomic Selection Models for the Prediction of Cotton Fiber Quality Phenotypes Across Multiple Environments.

Washington Gapare, Shiming Liu, Warren Conaty, Qian-Hao Zhu, Vanessa Gillespie, Danny Llewellyn, Warwick Stiller, Iain Wilson

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Washington GapareCSIRO Agriculture & Food, GPO Box 1600, Canberra, ACT 2601, Australia Washington.Gapare@csiro.au.ORCID 0000-0002-9787-8543
Shiming LiuCSIRO Agriculture & Food, Locked Bag 59, Narrabri, NSW 2390, Australia.
Warren ConatyCSIRO Agriculture & Food, Locked Bag 59, Narrabri, NSW 2390, Australia.
Qian-Hao ZhuCSIRO Agriculture & Food, GPO Box 1600, Canberra, ACT 2601, Australia.ORCID 0000-0002-6505-7417
Vanessa GillespieCSIRO Agriculture & Food, GPO Box 1600, Canberra, ACT 2601, Australia.
Danny LlewellynCSIRO Agriculture & Food, GPO Box 1600, Canberra, ACT 2601, Australia.ORCID 0000-0001-9539-8707
Warwick StillerCSIRO Agriculture & Food, Locked Bag 59, Narrabri, NSW 2390, Australia.
Iain WilsonCSIRO Agriculture & Food, GPO Box 1600, Canberra, ACT 2601, Australia.ORCID 0000-0002-4626-8059

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic selection (GS) has successfully been used in plant breeding to improve selection efficiency and reduce breeding time and cost. However, there has not been a study to evaluate GS prediction models that may be used for predicting cotton breeding lines across multiple environments. In this study, we evaluated the performance of Bayes Ridge Regression, BayesA, BayesB, BayesC and Reproducing Kernel Hilbert Spaces regression models. We then extended the single-site GS model to accommodate genotype × environment interaction (G×E) in order to assess the merits of multi- over single-environment models in a practical breeding and selection context in cotton, a crop for which this has not previously been evaluated. Our study was based on a population of 215 upland cotton (

Indexed as

Cotton FiberDatabases, GeneticEnvironmentGenome, PlantModels, GeneticSelection, GeneticGenetic MarkersInheritance PatternsPhenotypePolymorphism, Single NucleotidePrincipal Component AnalysisQuantitative Trait, HeritableGenetic MarkersBayesian modelsGenomic predictionGenomic selectionGenPredGossypium hirsutummarker × environment interactionShared Data Resources

Identifiers

PMID29559536
PMCPMC5940163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.