Evidence map›Paper›PMID 29556922›Full record

ArticlePathology oncology research : POR2019

IDH Mutation Analysis in Glioma Patients by CADMA Compared with SNaPshot Assay and two Immunohistochemical Methods.

Irena Urbanovska, Magdalena Houdova Megova, Zachary Dwight, Ondrej Kalita, Magdalena Uvirova, Jarmila Simova, Lucie Tuckova, Petr Buzrla, Tomas Palecek, Marian Hajduch and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Pathology oncology research : POR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Irena UrbanovskaCGB Laboratory Inc., Ostrava, Czech Republic.
Magdalena Houdova MegovaInstitute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University and University Hospital in Olomouc, Hnevotinska 5, 779 00, Olomouc, Czech Republic.
Zachary DwightDepartment of Pathology, University of Utah, Salt Lake City, UT, USA.
Ondrej KalitaDepartment of Neurosurgery, University Hospital Olomouc, Olomouc, Czech Republic.
Magdalena UvirovaCGB Laboratory Inc., Ostrava, Czech Republic.
Jarmila SimovaCGB Laboratory Inc., Ostrava, Czech Republic.
Lucie TuckovaDepartment of Clinical and Molecular Pathology, Faculty of Medicine and Dentistry, Palacky University and University Hospital in Olomouc, Olomouc, Czech Republic.
Petr BuzrlaInstitute of Pathology, Faculty of Medicine and University Hospital, University of Ostrava, Syllabova 19, 703 00, Ostrava - Zábřeh, Czech Republic.
Tomas PalecekNeurosurgery Clinic, University Hospital Ostrava, Ostrava, Czech Republic.
Marian HajduchInstitute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University and University Hospital in Olomouc, Hnevotinska 5, 779 00, Olomouc, Czech Republic.
Jana DvorackovaDepartment of Biomedical Sciences, Faculty of Medicine, University of Ostrava, Ostrava, Czech Republic. jana.dvorackova@fno.cz.
Jiri DrabekInstitute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University and University Hospital in Olomouc, Hnevotinska 5, 779 00, Olomouc, Czech Republic. jiri_drabek@seznam.cz.
CGB Laboratory · CZInstitute of Molecular and Translational Medicine · CZPalacký University Olomouc · CZUniversity of Ostrava · CZUniversity Hospital Olomouc · CZUniversity Hospital Ostrava · CZUniversity of Utah · US

Funding

Ministerstvo Školství, Mládeže a Tělovýchovy LM 2015089Ministerstvo Školství, Mládeže a Tělovýchovy LO 1304Ministerstvo Školství, Mládeže a Tělovýchovy NT 13581Ministerstvo Zdravotnictví Ceské Republiky NV 16-32198A
6 · The paper itself

Abstract

Mutations in IDH1/2 genes are a marker of good prognosis for glioma patients, associated with low grade gliomas and secondary glioblastomas. Immunohistochemistry and Sanger sequencing are current standards for IDH1/2 genotyping while many other methods exist. The aim of this study was to validate Competitive amplification of differentially melting amplicons (CADMA) PCR for IDH genotyping by comparison with SNaPshot assay and two immunohistochemical methods. In our study, 87 glioma patients (46 from Olomouc and 41 from Ostrava) were analyzed. IDH1/2 mutations in native bioptical samples were analyzed at DNA level by CADMA and SNaPshot while IDH1 mutations in FFPE samples were analyzed at protein level by two IHC methods. CADMA PCR sensitivity for IDH1 was 96.4% and specificity 100% for 86 concluded samples. SNaPshot assay sensitivity was 92.9% and specificity of 100% for 85 concluded samples. IHC in the laboratory no. 2 reached sensitivity 85.7% and specificity 100% for 86 concluded samples. IHC in the laboratory no. 4 reached sensitivity of 96.4% and specificity of 79.7% in 74 concluded samples. Only one IDH2 mutation was found by SNaPshot while CADMA yielded false negative result. In conclusion, CADMA is a valid method for IDH1 p.(R132H) testing with higher sensitivity than SNaPshot assay. Also, molecular genetic methods of IDH1 testing from native samples were more robust than IHC from FFPE.

Indexed as

Biomarkers, TumorBrain NeoplasmsDNA Mutational AnalysisGlioblastomaGliomaHumansImmunohistochemistryIsocitrate DehydrogenaseMutationSensitivity and SpecificityBiomarkers, TumorIsocitrate DehydrogenaseCADMAGliomaIDH1IDH2Mutation testing

Identifiers

PMID29556922
PMCPMC6614140
OpenAlexW2793555954

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.