Evidence map›Paper›PMID 29556852›Full record

ArticleFunctional & integrative genomics2018

Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39.

Vikas C Ghattargi, Yogesh S Nimonkar, Shaunak A Burse, Dimple Davray, Shreyas V Kumbhare, Sudarshan A Shetty, Meghana A Gaikwad, Mangesh V Suryavanshi, Swapnil P Doijad, Bhimashankar Utage and 4 more

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

  1. Insight into the Probiogenomic Potential ofFoods (Basel, Switzerland) · 2024
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  3. Genomic insights fromFrontiers in microbiology · 2024
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  4. Genome sequencing ofHeliyon · 2023
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  6. Whole genome sequence ofFrontiers in microbiology · 2023
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  7. Review
  8. Article
  9. Changes in Cell Membrane Fatty Acid Composition ofJournal of microbiology and biotechnology · 2020
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Vikas C GhattargiNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Yogesh S NimonkarNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Shaunak A BurseNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Dimple DavrayNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Shreyas V KumbhareNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Sudarshan A ShettyLaboratory of Microbiology, Wageningen University, Stippeneng 4, Building 124, 6708WE, Wageningen, the Netherlands.
Meghana A GaikwadNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Mangesh V SuryavanshiNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Swapnil P DoijadInstitute of Medical Microbiology, Biomedizinisches Forschungszentrum Seltersberg, Chubertstr. 81, 35392, Giessen, Germany.
Bhimashankar UtageNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Om Prakash SharmaNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Yogesh S ShoucheNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India.
Bharati S MetiDepartment of Biotechnology, Basaveshwar Engineering College, Bagalkot, Karnataka, 587102, India. bharatismeti@gmail.com.
Shrikant P PawarNational Centre for Microbial Resources (NCMR), National Centre for Cell Science (NCCS), Pune, Maharashtra, 411021, India. pawar.shree@gmail.com.
National Centre for Cell Science · INWageningen University & Research · NL

Funding

Department of Biotechnology , Ministry of Science and Technology BT/Coord.II/01/03/2016
6 · The paper itself

Abstract

The human gut microbiome plays a crucial role in human health and efforts need to be done for cultivation and characterisation of bacteria with potential health benefits. Here, we isolated a bacterium from a healthy Indian adult faeces and investigated its potential as probiotic. The cultured bacterial strain 17OM39 was identified as Enterococcus faecium by 16S rRNA gene sequencing. The strain 17OM39 exhibited tolerance to acidic pH, showed antimicrobial activity and displayed strong cell surface traits such as hydrophobicity and autoaggregation capacity. The strain was able to tolerate bile salts and showed bile salt hydrolytic (BSH) activity, exopolysaccharide production and adherence to human HT-29 cell line. Importantly, partial haemolytic activity was detected and the strain was susceptible to the human serum. Genomics investigation of strain 17OM39 revealed the presence of diverse genes encoding for proteolytic enzymes, stress response systems and the ability to produce essential amino acids, vitamins and antimicrobial compound Bacteriocin-A. No virulence factors and plasmids were found in this genome of the strain 17OM39. Collectively, these physiological and genomic features of 17OM39 confirm the potential of this strain as a candidate probiotic.

Indexed as

Genome, BacterialAdultBacterial ProteinsEnterococcus faeciumFecesHemolysisHT29 CellsHumansPeptide HydrolasesPolysaccharides, BacterialProbioticsRNA, Ribosomal, 16SSalt ToleranceBacterial ProteinsPeptide HydrolasesPolysaccharides, BacterialRNA, Ribosomal, 16SBile salt hydrolysisGenome analysisIndigenous probioticProbiotic genesSerum resistance

Identifiers

PMID29556852
OpenAlexW2789686048

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.