ArticleData in brief2018
A dataset of small molecules triggering transcriptional and translational cellular responses.
Article in Data in brief, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
18 citing papers in PubMed.
- Ligify 2.0: a web server for predicted small molecule biosensors.Nucleic acids research · 2026Article
- groovDB in 2026: a community-editable database of small molecule biosensors.Nucleic acids research · 2026Article
- Genetically Encoded Control ofACS synthetic biology · 2025Article
- Fundamentals and Exceptions of the LysR-type Transcriptional Regulators.ACS synthetic biology · 2024Review
- Accelerating Genetic Sensor Development, Scale-up, and Deployment Using Synthetic Biology.Biodesign research · 2024Article
- Applications of artificial intelligence and machine learning in dynamic pathway engineering.Biochemical Society transactions · 2023Review
- A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.Microbial biotechnology · 2023Review
- Sensbio: an online server for biosensor design.BMC bioinformatics · 2023Article
- Transcription factor-based biosensors for screening and dynamic regulation.Frontiers in bioengineering and biotechnology · 2023Review
- CRISPR/Cas12a-based technology: A powerful tool for biosensing in food safety.Trends in food science & technology · 2022Review
- Cell-Free Biosensors and AI Integration.Methods in molecular biology (Clifton, N.J.) · 2022Article
- A small-molecule chemical interface for molecular programs.Nucleic acids research · 2021Article
- Recent trends in biocatalysis.Chemical Society reviews · 2021Review
- Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories.iScience · 2020Article
- Metabolic perceptrons for neural computing in biological systems.Nature communications · 2019Article
- A CRISPR-Cas12a-derived biosensing platform for the highly sensitive detection of diverse small molecules.Nature communications · 2019Article
- Biosensor-based enzyme engineering approach applied to psicose biosynthesis.Synthetic biology (Oxford, England) · 2019Article
- Gene Editing and Systems Biology Tools for Pesticide Bioremediation: A Review.Frontiers in microbiology · 2019Review
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The aim of this dataset is to identify and collect compounds that are known for being detectable by a living cell, through the action of a genetically encoded biosensor and is centred on bacterial transcription factors. Such a dataset should open the possibility to consider a wide range of applications in synthetic biology. The reader will find in this dataset the name of the compounds, their InChI (molecular structure), the publication where the detection was reported, the organism in which this was detected or engineered, the type of detection and experiment that was performed as well as the name of the biosensor. A comment field is also provided that explains why the compound was included in the dataset, based on quotes from the reference publication or the database it was extracted from. Manual curation of
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.