Evidence map›Paper›PMID 29555777›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Expansions, diversification, and interindividual copy number variations of AID/APOBEC family cytidine deaminase genes in lampreys.

Stephen J Holland, Lesley M Berghuis, Justin J King, Lakshminarayan M Iyer, Katarzyna Sikora, Heather Fifield, Sarah Peter, Emma M Quinlan, Fumiaki Sugahara, Prashant Shingate and 11 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
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  3. LampreyProceedings of the National Academy of Sciences of the United States of America · 2025
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  14. Evolution of variable lymphocyte receptor B antibody loci in jawless vertebrates.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 8 countries.

Stephen J HollandMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Lesley M BerghuisProgram in Immunology and Infectious Diseases, Division of Biomedical Sciences, Faculty of Medicine, Memorial University of Newfoundland, St. John's, NL A1B 3V6, Canada.
Justin J KingProgram in Immunology and Infectious Diseases, Division of Biomedical Sciences, Faculty of Medicine, Memorial University of Newfoundland, St. John's, NL A1B 3V6, Canada.
Lakshminarayan M IyerNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894.
Katarzyna SikoraMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Heather FifieldProgram in Immunology and Infectious Diseases, Division of Biomedical Sciences, Faculty of Medicine, Memorial University of Newfoundland, St. John's, NL A1B 3V6, Canada.
Sarah PeterMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Emma M QuinlanProgram in Immunology and Infectious Diseases, Division of Biomedical Sciences, Faculty of Medicine, Memorial University of Newfoundland, St. John's, NL A1B 3V6, Canada.
Fumiaki SugaharaLaboratory for Evolutionary Morphology, RIKEN Center for Biosystems Dynamics Research, 650-0047 Kobe, Japan.
Prashant ShingateComparative and Medical Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, 138673 Biopolis, Singapore.
Inês TrancosoMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Norimasa IwanamiMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Elena TemerevaBiological Faculty, Moscow State University, 119992 Moscow, Russia.
Christine StrohmeierMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Shigeru KurataniLaboratory for Evolutionary Morphology, RIKEN Center for Biosystems Dynamics Research, 650-0047 Kobe, Japan.ORCID 0000-0001-9717-7221
Byrappa VenkateshComparative and Medical Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, 138673 Biopolis, Singapore.
Guillaume EvannoEcology and Ecosystem Health, Institut National de la Recherche Agronomique, Agrocampus Ouest, 35042 Rennes, France.
L AravindNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894.ORCID 0000-0003-0771-253X
Michael SchorppMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany.
Mani LarijaniProgram in Immunology and Infectious Diseases, Division of Biomedical Sciences, Faculty of Medicine, Memorial University of Newfoundland, St. John's, NL A1B 3V6, Canada.
Thomas BoehmMax Planck Institute of Immunobiology and Epigenetics, 79108 Freiburg, Germany; boehm@immunbio.mpg.de.
Max Planck Institute of Immunobiology and Epigenetics · DEMemorial University of Newfoundland · CAAgency for Science, Technology and Research · SGNational Institutes of Health · USHyogo Medical University · JPInstitut Agro Rennes-Angers · FRLomonosov Moscow State University · RURIKEN Center for Biosystems Dynamics Research · JPUniversity of Luxembourg · LU

Funding

Evolutionary Analysis and Comparative Genomics of Protein SuperfamiliesZIALM594244 · NLM · NATIONAL LIBRARY OF MEDICINE · PI ARAVIND, L · 2009 to 2025
$20.3M
CIHR
6 · The paper itself

Abstract

Cytidine deaminases of the AID/APOBEC family catalyze C-to-U nucleotide transitions in mRNA or DNA. Members of the APOBEC3 branch are involved in antiviral defense, whereas AID contributes to diversification of antibody repertoires in jawed vertebrates via somatic hypermutation, gene conversion, and class switch recombination. In the extant jawless vertebrate, the lamprey, two members of the AID/APOBEC family are implicated in the generation of somatic diversity of the variable lymphocyte receptors (VLRs). Expression studies linked

Indexed as

DNA Copy Number VariationsAmino Acid SequenceAnimalsAPOBEC-1 DeaminaseCytidine DeaminaseHigh-Throughput Nucleotide SequencingLampreysLymphocytesProtein ConformationReceptors, AntigenSequence HomologyWhole Genome SequencingAPOBEC-1 DeaminaseCytidine DeaminaseReceptors, Antigenantigen receptor diversificationDNA-editing enzymesevolutionjawless vertebrateRNA-editing enzymes

Identifiers

PMID29555777
PMCPMC5889659
OpenAlexW2793779891

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.