Evidence map›Paper›PMID 29555683›Full record

ArticleThe Journal of biological chemistry2018

Structure-function analyses reveal the molecular architecture and neutralization mechanism of a bacterial HEPN-MNT toxin-antitoxin system.

Xuanyan Jia, Jianyun Yao, Zengqiang Gao, Guangfeng Liu, Yu-Hui Dong, Xiaoxue Wang, Heng Zhang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

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  16. Biochemical characterization of SARS-CoV-2 nucleocapsid protein.Biochemical and biophysical research communications · 2020
    Article
  17. Article
  18. Review
  19. Towards Exploring Toxin-Antitoxin Systems inInternational journal of molecular sciences · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Xuanyan JiaFrom the Institute of Physical Science and Information Technology, Anhui University, Hefei, Anhui 230601.
Jianyun Yaothe CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301.
Zengqiang Gaothe Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, and.
Guangfeng Liuthe National Center for Protein Science Shanghai, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
Yu-Hui Dongthe Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, and.
Xiaoxue Wangthe CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, xxwang@scsio.ac.cn.
Heng Zhangthe Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, and zhangheng@ihep.ac.cn.
Chinese Academy of Sciences · CNInstitute of Oceanology · CNAnhui University · CNCenter for Excellence in Molecular Cell Science · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Toxin-antitoxin (TA) loci in bacteria are small genetic modules that regulate various cellular activities, including cell growth and death. The two-gene module encoding a HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain and a cognate MNT (minimal nucleotidyltransferase) domain have been predicted to represent a novel type II TA system prevalent in archaea and bacteria. However, the neutralization mechanism and cellular targets of the TA family remain unclear. The toxin SO_3166 having a HEPN domain and its cognate antitoxin SO_3165 with an MNT domain constitute a typical type II TA system that regulates cell motility and confers plasmid stability in the bacterium

Indexed as

Toxin-Antitoxin SystemsAmino Acid SequenceBacterial ToxinsCatalysisCatalytic DomainCrystallography, X-RayModels, MolecularMolecular StructureProtein BindingProtein MultimerizationProteolysisRibonucleasesScattering, Small AngleSequence Homology, Amino AcidShewanellaStructure-Activity RelationshipBacterial ToxinsRibonucleasescrystal structureRNA binding proteinRNA-protein interactionRNA ribonucleasesmall-angle X-ray scattering (SAXS)toxintoxin-antitoxin system

Identifiers

PMID29555683
PMCPMC5936836
OpenAlexW2792295134

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.