Evidence map›Paper›PMID 29555651›Full record

ArticleGenes & development2018

An inactivating mutation in the histone deacetylase SIRT6 causes human perinatal lethality.

Christina M Ferrer, Marielle Alders, Alex V Postma, Seonmi Park, Mark A Klein, Murat Cetinbas, Eva Pajkrt, Astrid Glas, Silvana van Koningsbruggen, Vincent M Christoffels and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  8. Sirt6 prevents the age-related decline of HProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Genes as Genome Stabilizers in Pluripotent Stem Cells.Advances in experimental medicine and biology · 2025
    Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. The many faces of SIRT6 in the retina and retinal pigment epithelium.Frontiers in cell and developmental biology · 2023
    Review
  17. NADOxidative medicine and cellular longevity · 2023
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Christina M Ferrer *The Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts 02114, USA.
Marielle Alders *Department of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Alex V Postma *Department of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Seonmi ParkThe Center for Regenerative Medicine (CReM), Boston Medical Center, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Mark A KleinDepartment of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin 53715, USA.
Murat CetinbasDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Eva PajkrtDepartment of Obstetrics and Gynecology, Academic Medical Center, Amsterdam NL-1105 AZ, the Netherlands.
Astrid GlasDepartment of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Silvana van KoningsbruggenDepartment of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Vincent M ChristoffelsDepartment of Obstetrics and Gynecology, Academic Medical Center, Amsterdam NL-1105 AZ, the Netherlands.
Marcel M A M MannensDepartment of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Lia KnegtDepartment of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Jean-Pierre EtchegarayThe Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts 02114, USA.
Ruslan I SadreyevDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
John M DenuDepartment of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin 53715, USA.
Gustavo MostoslavskyThe Center for Regenerative Medicine (CReM), Boston Medical Center, Boston University School of Medicine, Boston, Massachusetts 02118, USA.
Merel C van MaarleDepartment of Clinical Genetics, Academic Medical Center, Amsterdam 1105 AZ, the Netherlands.
Raul MostoslavskyThe Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts 02114, USA.
Academic Medical Center · NLBoston University · USHarvard University · USMassachusetts General Hospital · USMassachusetts Institute of Technology · USUniversity of Wisconsin–Madison · USWisconsin Institutes for Discovery · US

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Elizabeth Austen Lawson, Takara Leah Stanley · 1994 to 2026
$31.6M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
Reversible protein acetylation and sirtuin functionR01GM065386 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2003 to 2022
$7.3M
The Role of SIRT6 and Metabolism in APC Mediated TumorigenesisR01CA175727 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI MOSTOSLAVSKY, GUSTAVO, MOSTOSLAVSKY, RAUL · 2014 to 2018
$2.6M
NCI NIH HHS R01 CA175727NIDDK NIH HHS P30 DK040561NIGMS NIH HHS R01 GM065386NIGMS NIH HHS T32 GM008505
6 · The paper itself

Abstract

It has been well established that histone and DNA modifications are critical to maintaining the equilibrium between pluripotency and differentiation during early embryogenesis. Mutations in key regulators of DNA methylation have shown that the balance between gene regulation and function is critical during neural development in early years of life. However, there have been no identified cases linking epigenetic regulators to aberrant human development and fetal demise. Here, we demonstrate that a homozygous inactivating mutation in the histone deacetylase SIRT6 results in severe congenital anomalies and perinatal lethality in four affected fetuses. In vitro, the amino acid change at Asp63 to a histidine results in virtually complete loss of H3K9 deacetylase and demyristoylase functions. Functionally, SIRT6 D63H mouse embryonic stem cells (mESCs) fail to repress pluripotent gene expression, direct targets of SIRT6, and exhibit an even more severe phenotype than Sirt6-deficient ESCs when differentiated into embryoid bodies (EBs). When terminally differentiated toward cardiomyocyte lineage, D63H mutant mESCs maintain expression of pluripotent genes and fail to form functional cardiomyocyte foci. Last, human induced pluripotent stem cells (iPSCs) derived from D63H homozygous fetuses fail to differentiate into EBs, functional cardiomyocytes, and neural progenitor cells due to a failure to repress pluripotent genes. Altogether, our study described a germline mutation in SIRT6 as a cause for fetal demise, defining SIRT6 as a key factor in human development and identifying the first mutation in a chromatin factor behind a human syndrome of perinatal lethality.

Indexed as

AnimalsCell DifferentiationEmbryoid BodiesEmbryonic Stem CellsFetal DeathGene ExpressionHumansMiceMutationMyocytes, CardiacPluripotent Stem CellsSirtuinsSIRT6 protein, humanSirtuinschromatinembryonic developmentepigeneticshuman syndromeSIRT6

Identifiers

PMID29555651
PMCPMC5900711
OpenAlexW2792384603

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.