Evidence map›Paper›PMID 29554922›Full record

ArticleRetrovirology2018

A CRISPR screen for factors regulating SAMHD1 degradation identifies IFITMs as potent inhibitors of lentiviral particle delivery.

Ferdinand Roesch, Molly OhAinle, Michael Emerman

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

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  17. Analysis of IFITM-IFITM Interactions by a Flow Cytometry-Based FRET Assay.International journal of molecular sciences · 2019
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  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ferdinand RoeschDivisions of Human Biology and Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N, Mailstop C2-023, Seattle, WA, 98109, USA.
Molly OhAinleDivisions of Human Biology and Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N, Mailstop C2-023, Seattle, WA, 98109, USA.
Michael EmermanDivisions of Human Biology and Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N, Mailstop C2-023, Seattle, WA, 98109, USA. memerman@fredhutch.org.ORCID 0000-0002-4181-6335
Fred Hutch Cancer Center · US

Funding

CORE--VECTOR PRODUCTIONP30DK056465 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HEIMFELD, SHELLY · 1999 to 2014
$14.9M
VPR AND HIV INFECTIONR01AI030927 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EMERMAN, MICHAEL · 1991 to 2020
$5.3M
VPR AND HIV INFECTIONR37AI030927 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EMERMAN, MICHAEL · 2001 to 2010
$4.6M
ELLAS Environment, Leiomyomas, Latinas and Adiposity StudyR01MD011570 · NIMHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARSH, ERICA E · 2016 to 2021
$3.5M
The Evolution of Vpr/Vpx Function in Primate LentivirusesR01GM110570 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EMERMAN, MICHAEL · 2013 to 2016
$1.3M
HIV Host-Cell InteractionsR56AI030927 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EMERMAN, MICHAEL · 2016 to 2016
$561k
NIAID NIH HHS R01 AI030927NIAID NIH HHS R37 AI030927NIAID NIH HHS R56 AI030927NIDDK NIH HHS CCEH Pilot grant P30 DK56465NIDDK NIH HHS P30 DK056465NIGMS NIH HHS GM11570NIGMS NIH HHS R01 GM110570NIMHD NIH HHS R01 MD011570
6 · The paper itself

Abstract

The InterFeron Induced TransMembrane (IFITM) proteins are interferon stimulated genes that restrict many viruses, including HIV-1. SAMHD1 is another restriction factor blocking replication of HIV-1 and other viruses. Some lentiviruses evolved Vpx/Vpr proteins to degrade SAMHD1. However, this viral antagonism can be perturbed by host mechanisms: a recent study showed that in interferon (IFN) treated THP1 cells, Vpx is unable to degrade SAMHD1. In the present work, we designed an Interferon Stimulated Genes (ISGs)-targeted CRISPR knockout screen in order to identify ISGs regulating this phenotype. We found that IFITM proteins contribute to the IFNα-mediated protection of SAMHD1 by blocking VSV-G-mediated entry of the lentiviral particles delivering Vpx. Consistent with this, IFNα treatment and IFITM expression had no effect when the A-MLV envelope was used for pseudotyping. Using an assay measuring viral entry, we show that IFNα and IFITMs directly block the delivery of Vpx into cells by inhibiting VSV-G viral fusion. Strikingly, the VSV-G envelope was significantly more sensitive to this IFNα entry block and to IFITMs than HIV-1's natural envelope. This highlights important differences between VSV-G pseudotyped and wild-type HIV-1, in particular relative to the pathways they use for viral entry, suggesting that HIV-1 may have evolved to escape restriction factors blocking entry.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsHost-Pathogen InteractionsCell LineGene Knockout TechniquesHIV-1HumansInterferonsLentivirusLentivirus InfectionsMembrane ProteinsPhenotypeProteolysisSAM Domain and HD Domain-Containing Protein 1Viral Regulatory and Accessory ProteinsVirus InternalizationInterferonsMembrane ProteinsSAM Domain and HD Domain-Containing Protein 1Viral Regulatory and Accessory ProteinsA-MLVHIV-1IFITMInterferonPseudotypesSAMHD1Viral entryVpxVSV-G

Identifiers

PMID29554922
PMCPMC5859395
OpenAlexW2797468519

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.