Evidence map›Paper›PMID 29553541›Full record

ArticleJournal of visualized experiments : JoVE2018

A Method to Define the Effects of Environmental Enrichment on Colon Microbiome Biodiversity in a Mouse Colon Tumor Model.

Andrew K Fuller, Benjamin D Bice, Ashlee R Venancio, Olivia M Crowley, Ambur M Staab, Stephanie J Georges, Julio R Hidalgo, Annika V Warncke, Melinda L Angus-Hill

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Andrew K FullerDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Benjamin D BiceDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Ashlee R VenancioDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Olivia M CrowleyDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Ambur M StaabDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Stephanie J GeorgesDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Julio R HidalgoDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Annika V WarnckeDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah.
Melinda L Angus-HillDivision of Gastroenterology, Hepatology, and Nutrition, Department of Internal Medicine, University of Utah; Huntsman Cancer Institute, University of Utah; melinda.angus-hill@hci.utah.edu.

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
TCF/LEF function during intestinal maintenance and colon tumorigenesisP01CA073992 · NCI · UNIVERSITY OF UTAH · PI CAPECCHI, MARIO R · 1998 to 2014
$29.7M
Mouse Models of Sporadic Colorectal CancerK01CA128891 · NCI · UNIVERSITY OF UTAH · PI ANGUS-HILL, MELINDA · 2008 to 2012
$623k
NCI NIH HHS K01 CA128891NCI NIH HHS P01 CA073992NCI NIH HHS P30 CA042014
6 · The paper itself

Abstract

Several recent studies have illustrated the beneficial effects of living in an enriched environment on improving human disease. In mice, environmental enrichment (EE) reduces tumorigenesis by activating the mouse immune system, or affects tumor bearing animal survival by stimulating the wound repair response, including improved microbiome diversity, in the tumor microenvironment. Provided here is a detailed procedure to assess the effects of environmental enrichment on the biodiversity of the microbiome in a mouse colon tumor model. Precautions regarding animal breeding and considerations for animal genotype and mouse colony integration are described, all of which ultimately affect microbial biodiversity. Heeding these precautions may allow more uniform microbiome transmission, and consequently will alleviate non-treatment dependent effects that can confound study findings. Further, in this procedure, microbiota changes are characterized using 16S rDNA sequencing of DNA isolated from stool collected from the distal colon following long-term environmental enrichment. Gut microbiota imbalance is associated with the pathogenesis of inflammatory bowel disease and colon cancer, but also of obesity and diabetes among others. Importantly, this protocol for EE and microbiome analysis can be utilized to study the role of microbiome pathogenesis across a variety of diseases where robust mouse models exist that can recapitulate human disease.

Indexed as

AnimalsColonic NeoplasmsDisease Models, AnimalGastrointestinal MicrobiomeMiceMicrobiotaTumor Microenvironment

Identifiers

PMID29553541
PMCPMC5931413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.