Evidence map›Paper›PMID 29550355›Full record

Observational studyMolecular genetics and metabolism2018

Urine oligosaccharide screening by MALDI-TOF for the identification of NGLY1 deficiency.

Patricia L Hall, Christina Lam, John J Alexander, Ghazia Asif, Gerard T Berry, Carlos Ferreira, Hudson H Freeze, William A Gahl, Kim K Nickander, Jon D Sharer and 3 more

Open access · greenAbstract readObservational Study
In one paragraph

Observational study in Molecular genetics and metabolism, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  14. MALDI-2 for the Enhanced Analysis ofAnalytical chemistry · 2020
    Article
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 2 countries.

Patricia L HallEGL Genetic Diagnostics, LLC, Tucker, GA, USA. Electronic address: patriciahall@egl-eurofins.com.
Christina LamMedical Genetics Branch, NHGRI, NIH, Bethesda, MD, USA; Division of Genetic Medicine, Department of Pediatrics, University of Washington School of Medicine, Seattle, WA, USA; Division of Genetic Medicine, Department of Pediatrics, Seattle Children's Hospital, Seattle, WA, USA.
John J AlexanderEGL Genetic Diagnostics, LLC, Tucker, GA, USA; Department of Human Genetics, Emory University, Atlanta, GA, USA.
Ghazia AsifEGL Genetic Diagnostics, LLC, Tucker, GA, USA.
Gerard T BerryThe Manton Center for Orphan Disease Research, Division of Genetics and Genomics, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Carlos FerreiraMedical Genetics Branch, NHGRI, NIH, Bethesda, MD, USA; Division of Genetics and Metabolism, Children's National Medical Center, Washington, DC, USA.
Hudson H FreezeSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.
William A GahlMedical Genetics Branch, NHGRI, NIH, Bethesda, MD, USA; Office of the Clinical Director, NHGRI, NIH, Bethesda, MD, USA; NIH Undiagnosed Diseases Program, Common Fund, Office of the Director, NIH, Bethesda, MD, United States.
Kim K NickanderBiochemical Genetics Laboratory, Department of Laboratory Medicine and Pathology Mayo Clinic College of Medicine, Rochester, MN, USA.
Jon D SharerDepartment of Genetics, University of Alabama Birmingham, Birmingham, AL, USA.
Caroline M WatsonEGL Genetic Diagnostics, LLC, Tucker, GA, USA.
Lynne WolfeNIH Undiagnosed Diseases Program, Common Fund, Office of the Director, NIH, Bethesda, MD, United States.
Kimiyo M RaymondBiochemical Genetics Laboratory, Department of Laboratory Medicine and Pathology Mayo Clinic College of Medicine, Rochester, MN, USA.
Mayo Clinic · USBoston Children's Hospital · USChildren's National · USEgis (France) · FREmory University · USNational Human Genome Research Institute · USOffice of the Director · USSanford Burnham Prebys Medical Discovery Institute · USSeattle Children's Hospital · USUniversity of Alabama at Birmingham · US

Funding

NHGRI/DIR Clinical Support ServicesZIDHG200352 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI SOLOMON, BENJAMIN · 2009 to 2025
$182.8M
Human Biochemical GeneticsZIAHG000215 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GAHL, WILLIAM · 2009 to 2025
$72.6M
Skeletal GenomicsZIAHG200407 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI FERREIRA, CARLOS · 2020 to 2024
$3.7M
Novel Approaches to Mend Deficient GlycosylationR01DK065091 · NIDDK · BURNHAM INSTITUTE FOR MEDICAL RESEARCH · PI FREEZE, HUDSON H · 2003 to 2005
$1.0M
Intramural NIH HHS ZIA HG200407NIDDK NIH HHS R01 DK065091
6 · The paper itself

Abstract

N-glycanase deficiency (NGLY1 deficiency, NGLY1-CDDG), the first autosomal recessive congenital disorder of N-linked deglycosylation (CDDG), is caused by pathogenic variants in NGLY1. The majority of affected individuals have been identified using exome or genome sequencing. To date, no reliable, clinically available biomarkers have been identified. Urine oligosaccharide analysis was included as part of a routine evaluation for possible biomarkers in patients with confirmed NGLY1-CDDG. During the qualitative review of oligosaccharide profiles by an experienced laboratory director an abnormal analyte with a proposed structure of Neu5Ac1Hex1GlcNAc1-Asn was identified in NGLY1-CDDG patient urine samples. The same species has been observed in profiles from individuals affected with aspartylglucosaminuria, although the complete spectra are not identical. Additional studies using tandem mass spectrometry confirmed the analyte's structure. In addition to the known NGLY1-CDDG patients identified by this analysis, a single case was identified in a population referred for clinical testing who subsequently had a diagnosis of NGLY1-CDDG confirmed by molecular testing. Urine oligosaccharide screening by MALDI-TOF MS can identify individuals with NGLY1-CDDG. In addition, this potential biomarker might also be used to monitor the effectiveness of therapeutic options as they become available.

Indexed as

AdolescentBiomarkersChildChild, PreschoolCongenital Disorders of GlycosylationFemaleHumansInfantMaleOligosaccharidesPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidaseSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass SpectrometryYoung AdultBiomarkersNGLY1 protein, humanOligosaccharidesPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidaseBiochemical screeningBiomarker identificationGlycosylationNGLY1N-glycanaseN-glycanase deficiencyOligosaccharide screening

Identifiers

PMID29550355
PMCPMC10508399
OpenAlexW2792766106

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.