Evidence map›Paper›PMID 29550353›Full record

ArticleBiochimica et biophysica acta. Gene regulatory mechanisms2018

Herpesvirus-encoded microRNAs detected in human gingiva alter host cell transcriptome and regulate viral infection.

Afsar R Naqvi, Alexandra Seal, Jennifer Shango, Maria F Brambila, Gloria Martinez, Gabriela Chapa, Shirin Hasan, Tejabhiram Yadavalli, Dinesh Jaishankar, Deepak Shukla and 1 more

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Gene regulatory mechanisms, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  8. MicroRNAs: Harbingers and shapers of periodontal inflammation.Seminars in cell & developmental biology · 2022
    Review
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  13. Article
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  16. Viral MicroRNAs: Interfering the Interferon Signaling.Current pharmaceutical design · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Data in brief · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Afsar R NaqviDepartment of Periodontics, College of Dentistry, University of Illinois at Chicago, Chicago, Illinois 60612, USA. Electronic address: afsarraz@uic.edu.
Alexandra SealDepartment of Periodontics, College of Dentistry, University of Illinois at Chicago, Chicago, Illinois 60612, USA.
Jennifer ShangoDepartment of Periodontics, College of Dentistry, University of Illinois at Chicago, Chicago, Illinois 60612, USA.
Maria F BrambilaPosgrado de Periodoncia, Facultad de Odontologia, Universidad Autonoma de Nuevo León, Monterrey, Mexico.
Gloria MartinezPosgrado de Periodoncia, Facultad de Odontologia, Universidad Autonoma de Nuevo León, Monterrey, Mexico.
Gabriela ChapaPosgrado de Periodoncia, Facultad de Odontologia, Universidad Autonoma de Nuevo León, Monterrey, Mexico.
Shirin HasanThe Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA.
Tejabhiram YadavalliDepartment of Microbiology and Immunology, University of Illinois at Chicago, Chicago, Illinois 60612, USA; Department of Ophthalmology and Visual Sciences, University of Illinois Medical Center, Chicago, Illinois 60612, USA.
Dinesh JaishankarDepartment of Microbiology and Immunology, University of Illinois at Chicago, Chicago, Illinois 60612, USA; Department of Ophthalmology and Visual Sciences, University of Illinois Medical Center, Chicago, Illinois 60612, USA.
Deepak ShuklaDepartment of Microbiology and Immunology, University of Illinois at Chicago, Chicago, Illinois 60612, USA; Department of Ophthalmology and Visual Sciences, University of Illinois Medical Center, Chicago, Illinois 60612, USA.
Salvador NaresDepartment of Periodontics, College of Dentistry, University of Illinois at Chicago, Chicago, Illinois 60612, USA. Electronic address: snares@uic.edu.
University of Illinois Chicago · USUniversidad Autónoma de Nuevo León · MXNorthwestern University · US

Funding

Characterizing the role of viral microRNAs in regulating macrophage plasticityR21DE026259 · NIDCR · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NAQVI, AFSAR RAZA · 2017 to 2018
$440k
Elucidating the novel regulatory role of long non-coding RNAs in myeloid inflammatory cell differentiation and functionR03DE027147 · NIDCR · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NAQVI, AFSAR RAZA · 2018 to 2019
$320k
NIDCR NIH HHS R01 DE02105201A1NIDCR NIH HHS R03 DE027147NIDCR NIH HHS R21 DE026259NIDCR NIH HHS R21 DE026259-01A1
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are small, non-coding RNAs of ~18-25 nucleotides that have gained extensive attention as critical regulators in complex gene networks including immune cell lineage commitment, differentiation, maturation, and maintenance of immune homeostasis and function. Many viruses encode miRNAs that directly downregulate the expression of factors of the innate immune system, which includes proteins involved in promoting apoptosis and recruitment. In this study, we examined the expression profiles of three previously identified viral miRNAs (v-miRs) from the human herpesvirus (HHV) family, HSV-1 (miR-H1), KSHV (miR-K12-3-3p), and HCMV (miR-US4) in healthy and diseased periodontal tissues and observed increased levels of v-miRs in diseased tissues. To understand the significance of this increase, we overexpressed v-miRs in human oral keratinocytes (HOK), a common target for various HHV, and analyzed the impact of miR-H1 and miR-K12-3-3p on the host transcriptome. More than 1300 genes were altered in HOK overexpressing miR-H1 and miR-K12-3-3p. Global pathway analysis of deregulated genes identified several key cellular pathways that may favor viral persistence. Using bioinformatic analysis, we predicted hundreds of potential v-miR binding sites on genes downregulated by miR-H1 and miR-K12-3-3p and validated three novel target v-miR sites suggesting widespread direct and indirect modulation of numerous host genes/pathways by a single v-miR. Finally, in vitro HSV-1 infection assays showed that miR-H1 can regulate viral entry and infection in human oral keratinocytes (HOK). Overall, our results demonstrate clinical and functional relevance of pathogenic viral molecules viz., v-miRs that regulate both host and viral functions and may contribute to the pathogenesis of inflammatory oral diseases.

Indexed as

Binding SitesGene Expression Regulation, ViralGingivaHerpesvirus 1, HumanHerpesvirus 8, HumanHumansKeratinocytesMicroRNAsPeriodontal DiseasesRNA, ViralTranscriptomeVirus DiseasesMicroRNAsmiR-US4-1, human cytomegalovirusRNA, ViralGingival keratinocytesHerpesvirusHSV-1InflammationTranscriptomeViral microRNA

Identifiers

PMID29550353
PMCPMC6016836
OpenAlexW2789997973

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.