Evidence map›Paper›PMID 29549276›Full record

ArticleScientific reports2018

Impact of human-associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131.

Azucena Mora, Francisco Javier García-Peña, María Pilar Alonso, Susana Pedraza-Diaz, Luis Miguel Ortega-Mora, Daniel Garcia-Parraga, Cecilia López, Susana Viso, Ghizlane Dahbi, Juan Marzoa and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 45 citations in OpenAlex.

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  14. Snapshot Study of Whole Genome Sequences ofAntibiotics (Basel, Switzerland) · 2020
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  15. Genomic Characterization ofAntibiotics (Basel, Switzerland) · 2020
    Article
  16. Article
  17. Whole Genome Sequencing and Characteristics ofFrontiers in microbiology · 2020
    Article
  18. Clonal ST131-Microbial genomics · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Azucena MoraLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain. azucena.mora@usc.es.ORCID 0000-0002-0785-5795
Francisco Javier García-PeñaLaboratorio Central de Veterinaria de Algete, Ministerio de Agricultura y Pesca, Alimentación y Medio Ambiente, Ctra Madrid-Algete km 8, Madrid, Spain.
María Pilar AlonsoServicio de Microbiología, Hospital Universitario Lucus Augusti (HULA), Lugo, Spain.
Susana Pedraza-DiazSALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain.
Luis Miguel Ortega-MoraSALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain.
Daniel Garcia-ParragaL'Oceanogràfic, Ciudad de las Artes y las Ciencias, Junta de Murs i Valls, Valencia, Spain.
Cecilia LópezLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Susana VisoLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Ghizlane DahbiLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Juan MarzoaLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Martin J SergeantMicrobiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom.
Vanesa GarcíaLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.ORCID 0000-0001-5459-8325
Jorge BlancoLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.ORCID 0000-0003-0264-4136
Universidade de Santiago de Compostela · ESUniversidad Complutense de Madrid · ESHospital Universitario Lucus Augusti · ESMinisterio de Agricultura, Pesca y Alimentación · ESUniversity of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There is growing concern about the spreading of human microorganisms in relatively untouched ecosystems such as the Antarctic region. For this reason, three pinniped species (Leptonychotes weddellii, Mirounga leonina and Arctocephalus gazella) from the west coast of the Antartic Peninsula were analysed for the presence of Escherichia spp. with the recovery of 158 E. coli and three E. albertii isolates. From those, 23 harboured different eae variants (α1, β1, β2, ε1, θ1, κ, ο), including a bfpA-positive isolate (O49:H10-A-ST206, eae-k) classified as typical enteropathogenic E. coli. Noteworthy, 62 of the 158 E. coli isolates (39.2%) exhibited the ExPEC status and 27 (17.1%) belonged to sequence types (ST) frequently occurring among urinary/bacteremia ExPEC clones: ST12, ST73, ST95, ST131 and ST141. We found similarities >85% within the PFGE-macrorrestriction profiles of pinniped and human clinic O2:H6-B2-ST141 and O16:H5/O25b:H4-B2-ST131 isolates. The in silico analysis of ST131 Cplx genomes from the three pinnipeds (five O25:H4-ST131/PST43-fimH22-virotype D; one O16:H5-ST131/PST506-fimH41; one O25:H4-ST6252/PST9-fimH22-virotype D1) identified IncF and IncI1 plasmids and revealed high core-genome similarities between pinniped and human isolates (H22 and H41 subclones). This is the first study to demonstrate the worrisome presence of human-associated E. coli clonal groups, including ST131, in Antarctic pinnipeds.

Indexed as

AnimalsAntarctic RegionsBacterial Typing TechniquesCaniformiaDNA, BacterialEcosystemEscherichia coliEscherichia coli InfectionsHumansMolecular EpidemiologyMolecular TypingPhylogenyDNA, Bacterial

Identifiers

PMID29549276
PMCPMC5856829
OpenAlexW2805237812

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.