Evidence map›Paper›PMID 29549268›Full record

ArticleScientific reports2018

Sites associated with Kalydeco binding on human Cystic Fibrosis Transmembrane Conductance Regulator revealed by Hydrogen/Deuterium Exchange.

Laura J Byrnes, Yingrong Xu, Xiayang Qiu, Justin D Hall, Graham M West

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  16. CFTR is not a gluten lover either.The EMBO journal · 2019
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Laura J ByrnesStructural & Molecular Sciences, Pfizer, 445 Eastern Point Road, Groton, Connecticut, 06340, United States.
Yingrong XuStructural & Molecular Sciences, Pfizer, 445 Eastern Point Road, Groton, Connecticut, 06340, United States.
Xiayang QiuStructural & Molecular Sciences, Pfizer, 445 Eastern Point Road, Groton, Connecticut, 06340, United States.
Justin D HallStructural & Molecular Sciences, Pfizer, 445 Eastern Point Road, Groton, Connecticut, 06340, United States.
Graham M WestStructural & Molecular Sciences, Pfizer, 445 Eastern Point Road, Groton, Connecticut, 06340, United States. graham.west@pfizer.com.ORCID 0000-0003-2157-2123

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cystic Fibrosis (CF) is caused by mutations in the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR). Mutations associated with CF cause loss-of-function in CFTR leading to salt imbalance in epithelial tissues. Kalydeco (also called VX-770 or ivacaftor) was approved for CF treatment in 2012 but little is known regarding the compound's interactions with CFTR including the site of binding or mechanisms of action. In this study we use hydrogen/deuterium exchange (HDX) coupled with mass spectrometry to assess the conformational dynamics of a thermostabilized form of CFTR in apo and ligand-bound states. We observe HDX protection at a known binding site for AMPPNP and significant protection for several regions of CFTR in the presence of Kalydeco. The ligand-induced changes of CFTR in the presence of Kalydeco suggest a potential binding site.

Indexed as

Adenosine DiphosphateAdenylyl ImidodiphosphateAminophenolsBinding SitesCryoelectron MicroscopyCystic Fibrosis Transmembrane Conductance RegulatorDeuterium Exchange MeasurementHumansModels, MolecularProtein BindingProtein ConformationProtein StabilityQuinolonesThermodynamicsAdenosine DiphosphateAdenylyl ImidodiphosphateAminophenolsCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorivacaftorQuinolones

Identifiers

PMID29549268
PMCPMC5856801

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.