Evidence map›Paper›PMID 29549260›Full record

ArticleNature communications2018

HIV envelope V3 region mimic embodies key features of a broadly neutralizing antibody lineage epitope.

Daniela Fera, Matthew S Lee, Kevin Wiehe, R Ryan Meyerhoff, Alessandro Piai, Mattia Bonsignori, Baptiste Aussedat, William E Walkowicz, Therese Ton, Jeffrey O Zhou and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Daniela FeraLaboratory of Molecular Medicine, Boston Children's Hospital, Harvard Medical School, Boston, MA, 02115, USA. dfera1@swarthmore.edu.ORCID http://orcid.org/0000-0002-1706-9288
Matthew S LeeLaboratory of Molecular Medicine, Boston Children's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Kevin WieheDepartment of Medicine, Duke University School of Medicine, Duke University Medical Center, Durham, NC, 27710, USA.
R Ryan MeyerhoffDuke Human Vaccine Institute, Durham, NC, 27710, USA.
Alessandro PiaiDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0002-5264-1980
Mattia BonsignoriDepartment of Medicine, Duke University School of Medicine, Duke University Medical Center, Durham, NC, 27710, USA.
Baptiste AussedatDepartment of Bioorganic Chemistry, Sloan Kettering Institute, New York, NY, 10065, USA.
William E WalkowiczDepartment of Bioorganic Chemistry, Sloan Kettering Institute, New York, NY, 10065, USA.
Therese TonDepartment of Biology, Swarthmore College, Swarthmore, PA, 19081, USA.
Jeffrey O ZhouDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA, 19081, USA.
Samuel DanishefskyDepartment of Bioorganic Chemistry, Sloan Kettering Institute, New York, NY, 10065, USA.
Barton F HaynesDepartment of Medicine, Duke University School of Medicine, Duke University Medical Center, Durham, NC, 27710, USA.
Stephen C HarrisonLaboratory of Molecular Medicine, Boston Children's Hospital, Harvard Medical School, Boston, MA, 02115, USA.
Duke University · USBoston Children's Hospital · USKettering University · USSwarthmore College · USHarvard University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI MCMICHAEL, ANDREW JAMES · 2012 to 2018
$204.7M
Virus and Antibody Gene Sequencing CoreP01AI131251 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GEORGE M SHAW · 2017 to 2026
$40.7M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
Interplay between antibody affinity maturation and HIV evolution in a single hostF32AI116355 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI FERA, DANIELA · 2015 to 2016
$105k
Novel mouse model of HIV broad neutralizing antibody inductionF30AI122982 · NIAID · DUKE UNIVERSITY · PI MEYERHOFF, ROBERT RYAN · 2016 to 2017
$79k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NCRR NIH HHS S10 RR029205NIAID NIH HHS F30 AI122982NIAID NIH HHS F32 AI116355NIAID NIH HHS P01 AI131251NIAID NIH HHS UM1 AI100645NIGMS NIH HHS P41 GM103403NIGMS NIH HHS T32 GM007171NIH HHS S10 OD018164
6 · The paper itself

Abstract

HIV-1 envelope (Env) mimetics are candidate components of prophylactic vaccines and potential therapeutics. Here we use a synthetic V3-glycopeptide ("Man

Indexed as

Amino Acid MotifsAntibodies, NeutralizingEpitope MappingEpitopesGene Products, envHIV-1HIV AntibodiesHIV InfectionsHumansModels, MolecularMutationAntibodies, NeutralizingEpitopesGene Products, envHIV Antibodies

Identifiers

PMID29549260
PMCPMC5856820
OpenAlexW2792079469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.