Evidence map›Paper›PMID 29549111›Full record

ArticleDevelopment (Cambridge, England)2018

Disrupting the three-dimensional regulatory topology of the

Richard Sarro, Acadia A Kocher, Deena Emera, Severin Uebbing, Emily V Dutrow, Scott D Weatherbee, Timothy Nottoli, James P Noonan

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  8. Article
  9. Functional genomic approaches to elucidate the role of enhancers during development.Wiley interdisciplinary reviews. Systems biology and medicine · 2020
    Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Richard SarroDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.ORCID 0000-0003-2054-5369
Acadia A KocherDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.
Deena EmeraDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.ORCID 0000-0003-1034-3464
Severin UebbingDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.
Emily V DutrowDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.
Scott D WeatherbeeDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA.
Timothy NottoliDepartment of Comparative Medicine, Yale School of Medicine, New Haven, CT 06520, USA.
James P NoonanDepartment of Genetics, Yale School of Medicine, New Haven, CT 06520, USA james.noonan@yale.edu.ORCID 0000-0001-9632-5835
Yale University · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
Identifying enhancers with human-specific developmental functionsR01GM094780 · NIGMS · YALE UNIVERSITY · PI NOONAN, JAMES P · 2010 to 2018
$5.8M
Regulatory Innovations Driving the Evolution of the Mammalian NeocortexF32GM106628 · NIGMS · YALE UNIVERSITY · PI EMERA, DEENA · 2013 to 2015
$159k
NICHD NIH HHS T32 HD007149NIGMS NIH HHS F32 GM106628NIGMS NIH HHS R01 GM094780NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32 GM007499
6 · The paper itself

Abstract

Developmental gene expression patterns are orchestrated by thousands of distant-acting transcriptional enhancers. However, identifying enhancers essential for the expression of their target genes has proven challenging. Maps of long-range regulatory interactions may provide the means to identify enhancers crucial for developmental gene expression. To investigate this hypothesis, we used circular chromosome conformation capture coupled with interaction maps in the mouse limb to characterize the regulatory topology of

Indexed as

AnimalsEnhancer Elements, GeneticExtremitiesGene Expression Regulation, DevelopmentalIn Situ HybridizationMiceMice, KnockoutMorphogenesisPaired Box Transcription FactorsPhenotypeReal-Time Polymerase Chain Reactionhomeobox protein PITX1Paired Box Transcription FactorsEnhancer loss-of-function mutationsEnhancer-promoter interactionsGenomicsLimb development

Identifiers

PMID29549111
PMCPMC5963865
OpenAlexW2790162633

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.