Evidence map›Paper›PMID 29547119›Full record

ArticleeLife2018

Fine-tuning of substrate preferences of the Src-family kinase Lck revealed through a high-throughput specificity screen.

Neel H Shah, Mark Löbel, Arthur Weiss, John Kuriyan

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
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  10. The pathogenic T42A mutation in SHP2 rewires the interaction specificity of its N-terminal regulatory domain.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
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  13. Review
  14. Article
  15. Article
  16. The fitness cost of spurious phosphorylation.bioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Regulation of PD-L1 Expression by Nuclear Receptors.International journal of molecular sciences · 2023
    Review
  19. Marginal specificity in protein interactions constrains evolution of a paralogous family.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Neel H ShahDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID http://orcid.org/0000-0002-1186-0626
Mark LöbelDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.
Arthur WeissDepartment of Medicine, Rosalind Russell/Ephraim P Engleman Rheumatology Research Center, University of California, San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0002-2414-9024
John KuriyanDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID http://orcid.org/0000-0002-4414-5477

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARTHUR WEISS · 2011 to 2026
$31.1M
NIAID NIH HHS P01 AI091580NIH HHS P01 AI091580
6 · The paper itself

Abstract

The specificity of tyrosine kinases is attributed predominantly to localization effects dictated by non-catalytic domains. We developed a method to profile the specificities of tyrosine kinases by combining bacterial surface-display of peptide libraries with next-generation sequencing. Using this, we showed that the tyrosine kinase ZAP-70, which is critical for T cell signaling, discriminates substrates through an electrostatic selection mechanism encoded within its catalytic domain (Shah et al., 2016). Here, we expand this high-throughput platform to analyze the intrinsic specificity of any tyrosine kinase domain against thousands of peptides derived from human tyrosine phosphorylation sites. Using this approach, we find a difference in the electrostatic recognition of substrates between the closely related Src-family kinases Lck and c-Src. This divergence likely reflects the specialization of Lck to act in concert with ZAP-70 in T cell signaling. These results point to the importance of direct recognition at the kinase active site in fine-tuning specificity.

Indexed as

Amino Acid SequenceCSK Tyrosine-Protein KinaseHigh-Throughput Screening AssaysHumansLymphocyte Specific Protein Tyrosine Kinase p56(lck)Models, MolecularPeptide LibraryPeptidesPhosphorylationPhylogenySequence Homology, Amino Acidsrc-Family Kinasessrc Homology DomainsSubstrate SpecificityZAP-70 Protein-Tyrosine KinaseCSK protein, humanCSK Tyrosine-Protein KinaseLCK protein, humanLymphocyte Specific Protein Tyrosine Kinase p56(lck)Peptide LibraryPeptidessrc-Family KinasesZAP-70 Protein-Tyrosine Kinasebiochemistrychemical biologyE. coliimmunologyinflammationsubstrate specificityT celltyrosine kinase

Identifiers

PMID29547119
PMCPMC5889215

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.