Evidence map›Paper›PMID 29546549›Full record

ArticleTropical animal health and production2018

Identification of Mycobacterium species and Rhodococcus equi in peccary lymph nodes.

Amanda Bonalume Cordeiro de Morais, Carmen Alicia Daza Bolaños, Ana Carolina Alves, Cássia Yumi Ikuta, Gustavo Henrique Batista Lara, Marcos Bryan Heinemann, Rogério Giuffrida, Fernando Paganini Listoni, Mateus de Souza Ribeiro Mioni, Rodrigo Garcia Motta and 2 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Tropical animal health and production, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. A systematic review of the microbial community in taiassuids: a One Health approach.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Pooled it
  2. Article
  3. Article
  4. Pathogens (Basel, Switzerland) · 2021
    Article
  5. Article
  6. Current taxonomy of Rhodococcus species and their role in infections.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Amanda Bonalume Cordeiro de MoraisDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil. amandabonalume@gmail.com.
Carmen Alicia Daza BolañosDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil.
Ana Carolina AlvesDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil.
Cássia Yumi IkutaDepartment of Preventive Veterinary Medicine and Animal Health, University of São Paulo-USP, São Paulo, SP, Brazil.
Gustavo Henrique Batista LaraDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil.
Marcos Bryan HeinemannDepartment of Preventive Veterinary Medicine and Animal Health, University of São Paulo-USP, São Paulo, SP, Brazil.
Rogério GiuffridaSchool of Veterinary Medicine, UNOESTE-University of Oeste Paulista, Presidente Prudente, SP, Brazil.
Fernando Paganini ListoniDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil.
Mateus de Souza Ribeiro MioniDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil.
Rodrigo Garcia MottaUniRV-University of Rio Verde, Rio Verde, GO, Brazil.
Shinji TakaiDepartment of Animal Hygiene, School of Veterinary Medicine and Animal Sciences, Kitasato University, Tokyo, Japan.
Márcio Garcia RibeiroDepartment of Veterinary Hygiene and Public Health, School of Veterinary Medicine and Animal Sciences, UNESP-São Paulo State University, Botucatu, SP, Brazil.
Universidade Estadual Paulista (Unesp) · BRUniversidade de São Paulo · BRKitasato University · JPUniversidade de Rio Verde · BRUniversidade do Oeste Paulista · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium species and the virulence-associated proteins (vapA, vapB, and vapN genes) of Rhodococcus equi isolated from 330 lymph nodes of collared peccaries (Tayassu tajacu) and white-lipped peccaries (Tayassu pecari) intended for human consumption were investigated. Thirty-six (10.9%) R. equi strains were isolated; 3.3% (n = 11/330) were from white-lipped peccary lymph nodes, and 7.6% (25/330) were from collared peccary lymph nodes. Among the 11 isolates of R. equi from the white-lipped peccaries, 90.9% (n = 10/11) were obtained from the mesenteric lymph nodes, and only 9.1% (n = 1/10) were obtained from the mediastinal lymph nodes. In the 25 isolates of R. equi obtained from the collared peccaries, 40.0% (n = 10/25) were recovered from the mesenteric lymph nodes, 36% (n = 9/25) from the submandibular lymph nodes, and 24.0% (n = 6/25) from the mediastinal lymph nodes. No vapA, vapB, or vapN genes (plasmidless) or three host-associated types (pVAPA, pVAPB, and pVAPN) were identified among the R. equi isolates. Mycobacterium species were isolated in 3.03% (n = 10/330) of all the lymph nodes analyzed. Among the 10 mycobacterial isolates, 60% (n = 6/10) were from the white-lipped peccary lymph nodes, and 40% (n = 4/10) were from the collared peccary lymph nodes. Ten Mycobacterium species were detected by PCR-PRA with a predominance of M. avium type 1. Sequencing of the hsp65 and rpob genes revealed mycobacteria that were saprophytic (M. sinense and M. kumamotonense) and potentially pathogenic (M. colombiense and M. intracellulare) to humans and animals. To our knowledge, this is the first description of R. equi and/or mycobacterial species identified in the lymph nodes of peccary specimens. R. equi (plasmidless) and the mycobacterial species described here have been reported as causes of pulmonary and extrapulmonary infections in both immunocompetent and immunocompromised humans.

Indexed as

AnimalsArtiodactylaHumansLymph NodesMycobacteriumPolymerase Chain ReactionRhodococcus equiVirulenceCollared peccaryMycobacteriaRhodococcosisTayassuidae speciesWhite-lipped peccary

Identifiers

PMID29546549
OpenAlexW2794052679

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.