Evidence map›Paper›PMID 29546438›Full record

ArticleMicrobial ecology2018

Microbial and Functional Biodiversity Patterns in Sponges that Accumulate Bromopyrrole Alkaloids Suggest Horizontal Gene Transfer of Halogenase Genes.

Cintia P J Rua, Louisi S de Oliveira, Adriana Froes, Diogo A Tschoeke, Ana Carolina Soares, Luciana Leomil, Gustavo B Gregoracci, Ricardo Coutinho, Eduardo Hajdu, Cristiane C Thompson and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Harnessing the sponge microbiome for industrial biocatalysts.Applied microbiology and biotechnology · 2020
    Review
  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Cintia P J RuaInstituto de Química de São Carlos, Universidade de São Paulo, Avenida Trabalhador São-carlense, 400, Caixa Postal 780 - CEP13560-970, São Carlos, SP, CEP 13566-590, Brazil.ORCID http://orcid.org/0000-0002-1872-2963
Louisi S de OliveiraInstituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, s/ n° - CCS, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Rio de Janeiro, RJ, CEP 21941-599, Brazil.
Adriana FroesInstituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, s/ n° - CCS, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Rio de Janeiro, RJ, CEP 21941-599, Brazil.
Diogo A TschoekeInstituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, s/ n° - CCS, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Rio de Janeiro, RJ, CEP 21941-599, Brazil.
Ana Carolina SoaresInstituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, s/ n° - CCS, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Rio de Janeiro, RJ, CEP 21941-599, Brazil.
Luciana LeomilInstituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, s/ n° - CCS, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Rio de Janeiro, RJ, CEP 21941-599, Brazil.
Gustavo B GregoracciDepartamento de Ciências do Mar, Universidade Federal de São Paulo, Av. Alm. Saldanha da Gama, 89, Santos, CEP 11030-400, Brazil.
Ricardo CoutinhoInstituto de Estudos do Mar Almirante Paulo Moreira, Rua Kioto, 253, Praia dos Anjos, Arraial do Cabo, RJ, CEP 28930-000, Brazil.
Eduardo HajduMuseu Nacional - UFRJ, Departamento de Invertebrados. Laboratório de Porifera, Quinta da Boa Vista, s/n. São Cristóvão, Rio de Janeiro, CEP 20940-040, Brazil.
Cristiane C ThompsonInstituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Av. Carlos Chagas Filho, s/ n° - CCS, Lab de Microbiologia - Bloco A (Anexo) A3 - sl 102, Rio de Janeiro, RJ, CEP 21941-599, Brazil.
Roberto G S BerlinckInstituto de Química de São Carlos, Universidade de São Paulo, Avenida Trabalhador São-carlense, 400, Caixa Postal 780 - CEP13560-970, São Carlos, SP, CEP 13566-590, Brazil. rgsberlinck1010@outlook.com.
Fabiano L ThompsonInstituto de Química de São Carlos, Universidade de São Paulo, Avenida Trabalhador São-carlense, 400, Caixa Postal 780 - CEP13560-970, São Carlos, SP, CEP 13566-590, Brazil. fabianothompson1@gmail.com.
Universidade Federal do Rio de Janeiro · BRUniversidade de São Paulo · BRDepartamento Nacional de Produção Mineral · BRInstituto de Estudos do Mar Almirante Paulo Moreira · BRUniversidade Federal de São Paulo · BR

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior CIMAR 1986/2014Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro CNE E-26/110.735/2013Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/17616- 7Fundação de Amparo à Pesquisa do Estado de São Paulo BIOTA/BIOprospecTA grant 2013/50228-8
6 · The paper itself

Abstract

Marine sponge holobionts harbor complex microbial communities whose members may be the true producers of secondary metabolites accumulated by sponges. Bromopyrrole alkaloids constitute a typical class of secondary metabolites isolated from sponges that very often display biological activities. Bromine incorporation into secondary metabolites can be catalyzed by either halogenases or haloperoxidases. The diversity of the metagenomes of sponge holobiont species containing bromopyrrole alkaloids (Agelas spp. and Tedania brasiliensis) as well as holobionts devoid of bromopyrrole alkaloids spanning in a vast biogeographic region (approx. Seven thousand km) was studied. The origin and specificity of the detected halogenases was also investigated. The holobionts Agelas spp. and T. brasiliensis did not share microbial halogenases, suggesting a species-specific pattern. Bacteria of diverse phylogenetic origins encoding halogenase genes were found to be more abundant in bromopyrrole-containing sponges. The sponge holobionts (e.g., Agelas spp.) with the greatest number of sequences related to clustered, interspaced, short, palindromic repeats (CRISPRs) exhibited the fewest phage halogenases, suggesting a possible mechanism of protection from phage infection by the sponge host. This study highlights the potential of phages to transport halogenases horizontally across host sponges, particularly in more permissive holobiont hosts, such as Tedania spp.

Indexed as

BiodiversityAlkaloidsAnimalsBacteriaBacterial ProteinsBromineGene Transfer, HorizontalHydrolasesPhylogenyPoriferaSecondary MetabolismAlkaloidsBacterial ProteinsBrominehaloalkane dehalogenaseHydrolasesBromopyrrole alkaloidsHalogenasesHolobiontHorizontal gene transferMetagenomicsSponges

Identifiers

PMID29546438
OpenAlexW2791986135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.