Evidence map›Paper›PMID 29545534›Full record

ArticleScientific reports2018

Zinc knuckle of TAF1 is a DNA binding module critical for TFIID promoter occupancy.

Elizabeth C Curran, Hui Wang, Thomas R Hinds, Ning Zheng, Edith H Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. The roles of TAF1 in neuroscience and beyond.Royal Society open science · 2024
    Review
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  16. A novel variant inNeuronal signaling · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Elizabeth C CurranDepartment of Pharmacology, University of Washington, Seattle, WA, 98195, USA.
Hui WangDepartment of Pharmacology, University of Washington, Seattle, WA, 98195, USA.
Thomas R HindsDepartment of Pharmacology, University of Washington, Seattle, WA, 98195, USA.
Ning ZhengDepartment of Pharmacology, University of Washington, Seattle, WA, 98195, USA. nzheng@uw.edu.ORCID 0000-0002-1039-1581
Edith H WangDepartment of Pharmacology, University of Washington, Seattle, WA, 98195, USA. ehwang@uw.edu.
University of Washington · USHoward Hughes Medical Institute · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

The general transcription factor IID (TFIID) is the first component of the preinitiation complex (PIC) to bind the core promoter of RNA polymerase II transcribed genes. Despite its critical role in protein-encoded gene expression, how TFIID engages promoter DNA remains elusive. We have previously revealed a winged-helix DNA-binding domain in the N-terminal region of the largest TFIID subunit, TAF1. Here, we report the identification of a second DNA-binding module in the C-terminal half of human TAF1, which is encoded by a previously uncharacterized conserved zinc knuckle domain. We show that the TAF1 zinc knuckle aids in the recruit of TFIID to endogenous promoters vital for cellular proliferation. Mutation of the TAF1 zinc knuckle with defects in DNA binding compromises promoter occupancy of TFIID, which leads to a decrease in transcription and cell viability. Together, our studies provide a foundation to understand how TAF1 plays a central role in TFIID promoter binding and regulation of transcription initiation.

Indexed as

Promoter Regions, GeneticAmino Acid MotifsAmino Acid SequenceDNAHEK293 CellsHistone AcetyltransferasesHumansModels, MolecularProtein ConformationSequence HomologyTATA-Binding Protein Associated FactorsTranscription Factor TFIIDZincDNAHistone AcetyltransferasesTATA-binding protein associated factor 250 kDaTATA-Binding Protein Associated FactorsTranscription Factor TFIIDZinc

Identifiers

PMID29545534
PMCPMC5854669
OpenAlexW2794095698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.