Evidence map›Paper›PMID 29544097›Full record

ArticleCell host & microbe2018

Reshaping of the Dendritic Cell Chromatin Landscape and Interferon Pathways during HIV Infection.

Jarrod S Johnson, Sasha Y Lucas, Lynn M Amon, Stephanie Skelton, Rodolfo Nazitto, Sara Carbonetti, D Noah Sather, Dan R Littman, Alan Aderem

Abstract read
In one paragraph

Article in Cell host & microbe, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Oxysterol binding protein regulates the resolution of TLR-induced cytokine production in macrophages.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. IFIH1 (MDA5) is required for innate immune detection of intron-containing RNA expressed from the HIV-1 provirus.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Significance of the cGAS-STING Pathway in Health and Disease.International journal of molecular sciences · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Jarrod S JohnsonCenter for Infectious Disease Research, Seattle, WA 98109, USA. Electronic address: jarrod.johnson@biochem.utah.edu.
Sasha Y LucasCenter for Infectious Disease Research, Seattle, WA 98109, USA.
Lynn M AmonCenter for Infectious Disease Research, Seattle, WA 98109, USA.
Stephanie SkeltonCenter for Infectious Disease Research, Seattle, WA 98109, USA.
Rodolfo NazittoCenter for Infectious Disease Research, Seattle, WA 98109, USA; Department of Immunology, University of Washington School of Medicine, Seattle, WA 98109, USA.
Sara CarbonettiCenter for Infectious Disease Research, Seattle, WA 98109, USA.
D Noah SatherCenter for Infectious Disease Research, Seattle, WA 98109, USA.
Dan R LittmanMolecular Pathogenesis Program, The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY 10016, USA; Howard Hughes Medical Institute, New York University School of Medicine, New York, NY 10016, USA.
Alan AderemCenter for Infectious Disease Research, Seattle, WA 98109, USA; Department of Immunology, University of Washington School of Medicine, Seattle, WA 98109, USA.
Center for Infectious Disease Research · USUniversity of Washington · USHoward Hughes Medical Institute · USInfectious Disease Research Institute · US

Funding

Systems Biology CoreU19AI100627 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NOLAN, GARRY P · 2012 to 2021
$49.1M
LPS Signaling in Macrophages: The Roll of TollR01AI032972 · NIAID · UNIVERSITY OF WASHINGTON · PI ADEREM, ALAN A · 1992 to 2020
$14.6M
LPS REGULATION OF MACROPHAGE FUNCTIONR01AI025032 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI ADEREM, ALAN A · 1987 to 2016
$6.7M
Basic Training at the Intersection of Innate and Adaptive Immunity in DiseaseT32AI106677 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL, GOVERMAN, JOAN M · 2013 to 2022
$2.1M
Dendritic Cell Restriction and Innate Immune Sensing of HIV InfectionR21AI084633 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LITTMAN, DAN · 2010 to 2011
$463k
Evaluating Innate Immune Responses in Dendritic Cells During HIV InfectionF32AI093231 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI JOHNSON, JARROD SEAN · 2012 to 2013
$55k
NIAID NIH HHS F32 AI093231NIAID NIH HHS R01 AI025032NIAID NIH HHS R01 AI032972NIAID NIH HHS R21 AI084633NIAID NIH HHS T32 AI106677NIAID NIH HHS U19 AI100627
6 · The paper itself

Abstract

Myeloid dendritic cells (DCs) have the innate capacity to sense pathogens and orchestrate immune responses. However, DCs do not mount efficient immune responses to HIV-1, primarily due to restriction of virus reverse transcription, which prevents accumulation of viral cDNA and limits its detection through the cGAS-STING pathway. By allowing reverse transcription to proceed, we find that DCs detect HIV-1 in distinct phases, before and after virus integration. Blocking integration suppresses, but does not abolish, activation of the transcription factor IRF3, downstream interferon (IFN) responses, and DC maturation. Consistent with two stages of detection, HIV-1 "primes" chromatin accessibility of innate immune genes before and after integration. Once primed, robust IFN responses can be unmasked by agonists of the innate adaptor protein, MyD88, through a process that requires cGAS, STING, IRF3, and nuclear factor κB. Thus, HIV-1 replication increases material available for sensing, and discrete inflammatory inputs tune cGAS signaling to drive DC maturation.

Indexed as

Cell LineChromatinCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDendritic CellsFemaleHEK293 CellsHIV-1HIV InfectionsHost-Pathogen InteractionsHumansImmunity, InnateInterferon Regulatory Factor-3InterferonsInterferon Type IMaleMembrane ProteinscGAS protein, humanChromatinCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseInterferon Regulatory Factor-3InterferonsInterferon Type IIRF3 protein, humanMembrane ProteinsMYD88 protein, humanMyeloid Differentiation Factor 88NF-kappa BNucleotidyltransferasesSTING1 protein, humanSTING ProteincGASchromatin modificationdendritic cellDNA sensingHIV-1HIV integrationinnate immunityIRF3STINGtype I interferon

Identifiers

PMID29544097
PMCPMC6176724
OpenAlexW2793217090

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.