Evidence map›Paper›PMID 29543848›Full record

ArticlePloS one2018

Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.

Alexandra J Harvey, Carmel O'Brien, Jack Lambshead, John R Sheedy, Joy Rathjen, Andrew L Laslett, David K Gardner

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Deprogram and reprogram to solve the riddle of insulin resistance.The Journal of clinical investigation · 2021
    Article
  4. Article
  5. Review
  6. Energy Metabolism Regulates Stem Cell Pluripotency.Frontiers in cell and developmental biology · 2020
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alexandra J HarveySchool of BioSciences, University of Melbourne, Parkville, Victoria, Australia.ORCID 0000-0001-6696-0950
Carmel O'BrienARC Special Research Initiative, Stem Cells Australia, Melbourne, Victoria, Australia.
Jack LambsheadARC Special Research Initiative, Stem Cells Australia, Melbourne, Victoria, Australia.
John R SheedySchool of BioSciences, University of Melbourne, Parkville, Victoria, Australia.
Joy RathjenSchool of BioSciences, University of Melbourne, Parkville, Victoria, Australia.
Andrew L LaslettSchool of BioSciences, University of Melbourne, Parkville, Victoria, Australia.
David K GardnerSchool of BioSciences, University of Melbourne, Parkville, Victoria, Australia.
The University of Melbourne · AUAustralian Regenerative Medicine Institute · AUUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reprogramming somatic cells to a pluripotent cell state (induced Pluripotent Stem (iPS) cells) requires reprogramming of metabolism to support cell proliferation and pluripotency, most notably changes in carbohydrate turnover that reflect a shift from oxidative to glycolytic metabolism. Some aspects of iPS cell metabolism differ from embryonic stem (ES) cells, which may reflect a parental cell memory, or be a consequence of the reprogramming process. In this study, we compared the metabolism of 3 human iPS cell lines to assess the fidelity of metabolic reprogramming. When challenged with reduced oxygen concentration, ES cells have been shown to modulate carbohydrate use in a predictably way. In the same model, 2 of 3 iPS cell lines failed to regulate carbohydrate metabolism. Oxygen is a well-characterized regulator of cell function and embryo viability, and an inability of iPS cells to modulate metabolism in response to oxygen may indicate poor metabolic fidelity. As metabolism is linked to the regulation of the epigenome, assessment of metabolic responses of iPS cells to physiological stimuli during characterization is warranted to ensure complete cell reprogramming and as a measure of cell quality.

Indexed as

CarbohydratesCell LineCell ProliferationCellular ReprogrammingEmbryonic Stem CellsEpigenomicsFibroblastsGlycolysisHumansInduced Pluripotent Stem CellsOxygenCarbohydratesOxygen

Identifiers

PMID29543848
PMCPMC5854358
OpenAlexW2793361921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.