Evidence map›Paper›PMID 29543834›Full record

ArticlePloS one2018

MIP diversity from Trichoderma: Structural considerations and transcriptional modulation during mycoparasitic association with Fusarium solani olive trees.

Maroua Ben Amira, Robin Mom, David Lopez, Hatem Chaar, Ali Khouaja, Valérie Pujade-Renaud, Boris Fumanal, Aurélie Gousset-Dupont, Gisèle Bronner, Philippe Label and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  4. Identification ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  5. Article
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  7. FungalBiomolecules · 2021
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Maroua Ben AmiraUCA, UMR PIAF, Clermont-Ferrand, France.
Robin MomUCA, UMR PIAF, Clermont-Ferrand, France.
David LopezUCA, UMR PIAF, Clermont-Ferrand, France.
Hatem ChaarNational Institute of Agronomy of Tunisia (INAT), Crop Improvement Laboratory, INRAT, Tunis, Tunisia.
Ali KhouajaNational Institute of Agronomy of Tunisia (INAT), Sylvo-Pastoral Laboratory of Tabarka, Tabarka,Tunisia.
Valérie Pujade-RenaudUCA, UMR PIAF, Clermont-Ferrand, France.
Boris FumanalUCA, UMR PIAF, Clermont-Ferrand, France.
Aurélie Gousset-DupontUCA, UMR PIAF, Clermont-Ferrand, France.
Gisèle BronnerUniversité Clermont Auvergne, UMR CNRS 6023 Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.
Philippe LabelUCA, UMR PIAF, Clermont-Ferrand, France.
Jean-Louis JulienUCA, UMR PIAF, Clermont-Ferrand, France.
Mohamed Ali TrikiInstitut de l'Olivier, LR: Amélioration et Protection des Ressources Génétiques de l'Olivier-Université de Sfax, Sfax, Tunisia.
Daniel AuguinUniversité d'Orléans, Laboratoire de Biologie des Ligneux et des Grandes Cultures, UPRES EA 1207, INRA-USC1328, Orléans, France.
Jean-Stéphane VenisseUCA, UMR PIAF, Clermont-Ferrand, France.ORCID 0000-0001-9243-2502
Institut National Agronomique de Tunisie · TNCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCentre National de la Recherche Scientifique · FRUniversité d'Orléans · FRUniversity of Sfax · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Major intrinsic proteins (MIP) are characterized by a transmembrane pore-type architecture that facilitates transport across biomembranes of water and a variety of low molecular weight solutes. They are found in all parts of life, with remarkable protein diversity. Very little is known about MIP from fungi. And yet, it can legitimately be stated that MIP are pivotal molecular components in the privileged relationships fungi enjoy with plants or soil fauna in various environments. To date, MIP have never been studied in a mycoparasitism situation. In this study, the diversity, expression and functional prediction of MIP from the genus Trichoderma were investigated. Trichoderma spp. genomes have at least seven aquaporin genes. Based on a phylogenetic analysis of the translated sequences, members were assigned to the AQP, AQGP and XIP subfamilies. In in vitro and in planta assays with T. harzianum strain Ths97, expression analyses showed that four genes were constitutively expressed. In a mycoparasitic context with Fusarium solani, the causative agent of fusarium dieback on olive tree roots, these genes were up-regulated. This response is of particular interest in analyzing the MIP promoter cis-regulatory motifs, most of which are involved in various carbon and nitrogen metabolisms. Structural analyses provide new insights into the possible role of structural checkpoints by which these members transport water, H2O2, glycerol and, more generally, linear polyols across the membranes. Taken together, these results provide the first evidence that MIP may play a key role in Trichoderma mycoparasitism lifestyle.

Indexed as

AquaporinsBiological Transport, ActiveFungal ProteinsFusariumGene Expression ProfilingGene Expression Regulation, FungalModels, MolecularOleaPhylogenyPlant RootsPromoter Regions, GeneticProtein ConformationSequence Analysis, RNATrichodermaAquaporinsFungal Proteins

Identifiers

PMID29543834
PMCPMC5854309
OpenAlexW2792084228

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.