Evidence map›Paper›PMID 29543809›Full record

ArticlePLoS computational biology2018

Meet-U: Educating through research immersion.

Nika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune and 39 more

Abstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors.

Nika AbdollahiDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Alexandre AlbaniDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Eric AnthonyDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Agnes BaudDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Mélissa CardonDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Robert ClercDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Dariusz CzerneckiDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Romain ConteDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.ORCID 0000-0002-3677-9664
Laurent DavidDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Agathe DelauneDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Samia DjerroudDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Pauline FourgouxDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Nadège GuiglielmoniDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Jeanne LaurentieDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Nathalie LehmannDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Camille LochardDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Rémi MontagneDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Vasiliki MyrodiaDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Vaitea OpuuDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Elise PareyDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Lélia PolitDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Sylvain PrivéDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Chloé QuignotDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Maria Ruiz-CuevasDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Mariam SissokoDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.
Nicolas SompairacDepartments of Computer Science and of Life Sciences, Sorbonne Université (SU) / UPMC, Paris, France.ORCID 0000-0001-8759-2077
Audrey VallerixDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.
Violaine VerrecchiaDepartment of Biology and of Computer Science, Univ. Paris-Sud, Université Paris-Saclay (UPSay), Orsay, France.ORCID 0000-0002-2385-3079
Marc DelarueUnit of Structural Dynamics of Macromolecules, CNRS, Institut Pasteur, Paris, France.
Raphael GuéroisInstitute for Integrative Biology of the Cell (I2BC), IBITECS, CEA, CNRS, Univ. Paris-Sud, UPSay, Gif-sur-Yvette cedex, France.
Yann PontyAMIBio team, Laboratoire d'informatique de l'École polytechnique (LIX, UMR 7161) / Inria Saclay, UPSay, Palaiseau, France.
Sophie Sacquin-MoraLaboratoire de Biochimie Théorique, UPR 9080 CNRS Institut de Biologie Physico-Chimique, Paris, France.
Alessandra CarboneSorbonne Université / UPMC, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris, France.ORCID 0000-0003-2098-5743
Christine FroidevauxLRI, Univ. Paris-Sud, CNRS, UPSay, Orsay, France.
Stéphane Le CromSorbonne Université / UPMC, Univ. Antilles, Univ. Nice Sophia Antipolis, CNRS, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), Paris, France.ORCID 0000-0002-0534-7797
Olivier LespinetInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, UPSay, Gif-sur-Yvette cedex, France.
Martin WeigtSorbonne Université / UPMC, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris, France.
Samer AbboudInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, UPSay, Gif-sur-Yvette cedex, France.
Juliana BernardesSorbonne Université / UPMC, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris, France.ORCID 0000-0003-1341-4256
Guillaume BouvierDepartment of Structural Biology and CheImistry (CNRS UMR3528) - Center of Bioinformatics, Biostatistics and Integrative Biology (CNRS USR3756) - Structural Bioinformatics Unit, Institut Pasteur, Paris, France.ORCID 0000-0003-2792-6084
Chloé DequekerSorbonne Université / UPMC, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris, France.ORCID 0000-0003-2864-5698
Arnaud FerréMaIAGE, INRA, UPSay, Jouy-en-Josas, France and LIMSI, CNRS, UPSay, Orsay, France.
Patrick FuchsSorbonne Université / UPMC, Ecole Normale Supérieure - PLS Research University, Département de Chimie, CNRS, Laboratoire des Biomolécules, UMR 7203 - Univ. Paris Diderot, Sorbonne Paris Cité, Paris, France.ORCID 0000-0001-7117-994X
Gaëlle LelandaisInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, UPSay, Gif-sur-Yvette cedex, France.
Pierre PoulainMitochondria, Metals and Oxidative Stress Group, Institut Jacques Monod, UMR 7592, Univ. Paris Diderot, CNRS, Sorbonne Paris Cité, Paris, France.
Hugues RichardSorbonne Université / UPMC, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris, France.ORCID 0000-0001-7776-1340
Hugo SchwekeInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, UPSay, Gif-sur-Yvette cedex, France.ORCID 0000-0002-7830-1546
Elodie LaineSorbonne Université / UPMC, CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), UMR 7238, Paris, France.ORCID 0000-0003-4870-6304
Anne LopesInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, UPSay, Gif-sur-Yvette cedex, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a new educational initiative called Meet-U that aims to train students for collaborative work in computational biology and to bridge the gap between education and research. Meet-U mimics the setup of collaborative research projects and takes advantage of the most popular tools for collaborative work and of cloud computing. Students are grouped in teams of 4-5 people and have to realize a project from A to Z that answers a challenging question in biology. Meet-U promotes "coopetition," as the students collaborate within and across the teams and are also in competition with each other to develop the best final product. Meet-U fosters interactions between different actors of education and research through the organization of a meeting day, open to everyone, where the students present their work to a jury of researchers and jury members give research seminars. This very unique combination of education and research is strongly motivating for the students and provides a formidable opportunity for a scientific community to unite and increase its visibility. We report on our experience with Meet-U in two French universities with master's students in bioinformatics and modeling, with protein-protein docking as the subject of the course. Meet-U is easy to implement and can be straightforwardly transferred to other fields and/or universities. All the information and data are available at www.meet-u.org.

Indexed as

Computational BiologyHumansResearchResearch DesignStudentsUniversities

Identifiers

PMID29543809
PMCPMC5854232

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.