Evidence map›Paper›PMID 29543717›Full record

ReviewInternational journal of molecular sciences2018

Comparative Methods for Molecular Determination of Host-Specificity Factors in Plant-Pathogenic Fungi.

Nilam Borah, Emad Albarouki, Jan Schirawski

Abstract readReview
In one paragraph

Review in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Novel sources of resistance to fusarium wilt inFrontiers in plant science · 2023
    Article
  7. Structured Framework and Genome Analysis ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  8. Article
  9. Molecular and Environmental Triggering Factors of Pathogenicity ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  10. Review
  11. Recent Advances in Carbon and Nitrogen Metabolism in C3 Plants.International journal of molecular sciences · 2020
    Review
  12. Article
  13. Article
  14. Plant⁻Microbe Interaction 2017-The Good, the Bad and the Diverse.International journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nilam BorahInstitute of Applied Microbiology, RWTH Aachen University, Microbial Genetics, Worringerweg 1, 52074 Aachen, Germany. nilam.borah@rwth-aachen.de.
Emad AlbaroukiInstitute of Applied Microbiology, RWTH Aachen University, Microbial Genetics, Worringerweg 1, 52074 Aachen, Germany. emad.albarouki@rwth-aachen.de.
Jan SchirawskiInstitute of Applied Microbiology, RWTH Aachen University, Microbial Genetics, Worringerweg 1, 52074 Aachen, Germany. jan.schirawski@rwth-aachen.de.ORCID 0000-0003-1615-1201

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many plant-pathogenic fungi are highly host-specific. In most cases, host-specific interactions evolved at the time of speciation of the respective host plants. However, host jumps have occurred quite frequently, and still today the greatest threat for the emergence of new fungal diseases is the acquisition of infection capability of a new host by an existing plant pathogen. Understanding the mechanisms underlying host-switching events requires knowledge of the factors determining host-specificity. In this review, we highlight molecular methods that use a comparative approach for the identification of host-specificity factors. These cover a wide range of experimental set-ups, such as characterization of the pathosystem, genotyping of host-specific strains, comparative genomics, transcriptomics and proteomics, as well as gene prediction and functional gene validation. The methods are described and evaluated in view of their success in the identification of host-specificity factors and the understanding of their functional mechanisms. In addition, potential methods for the future identification of host-specificity factors are discussed.

Indexed as

Genome, FungalHost SpecificityFungiPlantsVirulenceeffectorfungigenotypinghost specificityplant pathogensequencing

Identifiers

PMID29543717
PMCPMC5877724

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.