Evidence map›Paper›PMID 29540820›Full record

ArticleScientific reports2018

Photochemical analysis of structural transitions in DNA liquid crystals reveals differences in spatial structure of DNA molecules organized in liquid crystalline form.

Katarzyna Brach, Akiko Hatakeyama, Claude Nogues, Joanna Olesiak-Banska, Malcolm Buckle, Katarzyna Matczyszyn

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Katarzyna BrachAdvanced Materials Engineering and Modelling Group, Wroclaw University of Science and Technology, Wroclaw, 50370, Poland.
Akiko HatakeyamaLBPA, IDA, ENS Cachan, CNRS, Université Paris-Saclay, Cachan, F-94235, France.
Claude NoguesLBPA, IDA, ENS Cachan, CNRS, Université Paris-Saclay, Cachan, F-94235, France.
Joanna Olesiak-BanskaAdvanced Materials Engineering and Modelling Group, Wroclaw University of Science and Technology, Wroclaw, 50370, Poland.
Malcolm BuckleLBPA, IDA, ENS Cachan, CNRS, Université Paris-Saclay, Cachan, F-94235, France. buckle@lbpa.ens-cachan.fr.
Katarzyna MatczyszynAdvanced Materials Engineering and Modelling Group, Wroclaw University of Science and Technology, Wroclaw, 50370, Poland. katarzyna.matczyszyn@pwr.edu.pl.ORCID 0000-0001-8578-8340
École Normale Supérieure Paris-Saclay · FRWrocław University of Science and Technology · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The anisotropic shape of DNA molecules allows them to form lyotropic liquid crystals (LCs) at high concentrations. This liquid crystalline arrangement is also found in vivo (e.g., in bacteriophage capsids, bacteria or human sperm nuclei). However, the role of DNA liquid crystalline organization in living organisms still remains an open question. Here we show that in vitro, the DNA spatial structure is significantly changed in mesophases compared to non-organized DNA molecules. DNA LCs were prepared from pBluescript SK (pBSK) plasmid DNA and investigated by photochemical analysis of structural transitions (PhAST). We reveal significant differences in the probability of UV-induced pyrimidine dimer photoproduct formation at multiple loci on the DNA indicative of changes in major groove architecture.

Indexed as

DNALiquid CrystalsMicroscopy, PolarizationNucleic Acid ConformationPhotochemical ProcessesPlasmidsPyrimidine DimersDNAPyrimidine Dimers

Identifiers

PMID29540820
PMCPMC5852169
OpenAlexW2794133699

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.