Evidence map›Paper›PMID 29540679›Full record

ArticleNature communications2018

Circular DNA elements of chromosomal origin are common in healthy human somatic tissue.

Henrik Devitt Møller, Marghoob Mohiyuddin, Iñigo Prada-Luengo, M Reza Sailani, Jens Frey Halling, Peter Plomgaard, Lasse Maretty, Anders Johannes Hansen, Michael P Snyder, Henriette Pilegaard and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 239 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
239citing papers in PubMed, 1 pooled it
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

239 citing papers in PubMed, 1 synthesis or guideline pooled it, 425 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  10. Review
  11. Global characterization of extrachromosomal circular DNA in cerebrospinal fluid of lung adenocarcinoma.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Article
  12. Article
  13. Article
  14. Review
  15. Functional role of small extrachromosomal circular DNA in colorectal cancer.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Cytoplasmic circular dsDNA is a key constituent of stress granules.bioRxiv : the preprint server for biology · 2026
    Article
  20. Article

179 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Henrik Devitt MøllerDepartment of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark. hdmoller@bio.ku.dk.
Marghoob MohiyuddinRoche Sequencing Solutions, Belmont, CA, 94002, USA.
Iñigo Prada-LuengoDepartment of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark.ORCID http://orcid.org/0000-0002-4392-0726
M Reza SailaniDepartment of Genetics, Center for Genomics and Personalized Medicine Stanford University, School of Medicine, Stanford, CA, 94305, USA.
Jens Frey HallingDepartment of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark.
Peter PlomgaardDepartment of Clinical Biochemistry, Rigshospitalet, Copenhagen, DK-2100, Denmark.
Lasse MarettyDepartment of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark.
Anders Johannes HansenThe Natural History Museum of Denmark, University of Copenhagen, Copenhagen, DK-1350, Denmark.
Michael P SnyderDepartment of Genetics, Center for Genomics and Personalized Medicine Stanford University, School of Medicine, Stanford, CA, 94305, USA.
Henriette PilegaardDepartment of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark.
Hugo Y K LamRoche Sequencing Solutions, Belmont, CA, 94002, USA.
Birgitte RegenbergDepartment of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark. bregenberg@bio.ku.dk.ORCID http://orcid.org/0000-0003-4996-7012
University of Copenhagen · DKStanford University · USCopenhagen University Hospital · DK

Funding

Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2014 to 2018
$15.2M
NHGRI NIH HHS P50 HG007735
6 · The paper itself

Abstract

The human genome is generally organized into stable chromosomes, and only tumor cells are known to accumulate kilobase (kb)-sized extrachromosomal circular DNA elements (eccDNAs). However, it must be expected that kb eccDNAs exist in normal cells as a result of mutations. Here, we purify and sequence eccDNAs from muscle and blood samples from 16 healthy men, detecting ~100,000 unique eccDNA types from 16 million nuclei. Half of these structures carry genes or gene fragments and the majority are smaller than 25 kb. Transcription from eccDNAs suggests that eccDNAs reside in nuclei and recurrence of certain eccDNAs in several individuals implies DNA circularization hotspots. Gene-rich chromosomes contribute to more eccDNAs per megabase and the most transcribed protein-coding gene in muscle, TTN (titin), provides the most eccDNAs per gene. Thus, somatic genomes are rich in chromosome-derived eccDNAs that may influence phenotypes through altered gene copy numbers and transcription of full-length or truncated genes.

Indexed as

Chromosomes, HumanDNA, CircularHumansMutationTranscription, GeneticDNA, Circular

Identifiers

PMID29540679
PMCPMC5852086
OpenAlexW2790044474

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.