Evidence map›Paper›PMID 29540473›Full record

ArticleThe Journal of biological chemistry2018

An activating mutation of interferon regulatory factor 4 (IRF4) in adult T-cell leukemia.

Mathew A Cherian, Sydney Olson, Hemalatha Sundaramoorthi, Kitra Cates, Xiaogang Cheng, John Harding, Andrew Martens, Grant A Challen, Manoj Tyagi, Lee Ratner and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. TCR Pathway Mutations in Mature T Cell Lymphomas.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  7. Article
  8. Review
  9. Article
  10. Clinical application of genomic aberrations in adult T-cell leukemia/lymphoma.Journal of clinical and experimental hematopathology : JCEH · 2020
    Review
  11. Article
  12. Molecular biology of human T cell leukemia virus.Seminars in diagnostic pathology · 2020
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Mathew A CherianFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Sydney Olsonthe Department of Biology, University of Wisconsin, Madison, Wisconsin 53706, and.
Hemalatha SundaramoorthiFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Kitra CatesFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Xiaogang ChengFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
John HardingFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Andrew MartensFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Grant A ChallenFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Manoj Tyagithe Computational Biology Branch, National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland 20892.
Lee RatnerFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110, lratner@wustl.edu.
Daniel RauchFrom the Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110.
Washington University in St. Louis · USNational Institutes of Health · USUniversity of Wisconsin–Madison · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Role of Inflammation in Tax-mediated TumorigenesisP01CA100730 · NCI · WASHINGTON UNIVERSITY · PI Malachi Griffith · 2003 to 2026
$44.8M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
Targeting the Bone Marrow Microenvironment In Acute Lymphocytic LeukemiaP50CA171963 · NCI · WASHINGTON UNIVERSITY · PI TODD A FEHNIGER · 2013 to 2026
$31.6M
WU-MDACC Inter-Institutional Molecular Imaging CenterP50CA094056 · NCI · WASHINGTON UNIVERSITY · PI KOPAN, RAPHAEL · 2002 to 2016
$26.3M
Washington University Paul Calabresi K12 Career Development Award for Clinical OncologyK12CA167540 · NCI · WASHINGTON UNIVERSITY · PI John F. Dipersio, Ramaswamy Govindan · 2012 to 2026
$11.7M
PROLIFERATIVE EFFECTS OF HTLV1R01CA063417 · NCI · WASHINGTON UNIVERSITY · PI RATNER, LEE · 1995 to 2017
$3.7M
NCATS NIH HHS UL1 TR000448NCATS NIH HHS UL1 TR002345NCI NIH HHS K12 CA167540NCI NIH HHS P01 CA100730NCI NIH HHS P30 CA091842NCI NIH HHS P50 CA094056NCI NIH HHS P50 CA171963NCI NIH HHS R01 CA063417
6 · The paper itself

Abstract

The human T-cell leukemia virus-1 (HTLV-1) oncoprotein Tax drives cell proliferation and resistance to apoptosis early in the pathogenesis of adult T-cell leukemia (ATL). Subsequently, probably as a result of specific immunoediting, Tax expression is down-regulated and functionally replaced by somatic driver mutations of the host genome. Both amplification and point mutations of interferon regulatory factor 4 (IRF4) have been previously detected in ATL., K59R is the most common single-nucleotide variation of IRF4 and is found exclusively in ATL. High-throughput whole-exome sequencing revealed recurrent activating genetic alterations in the T-cell receptor, CD28, and NF-κB pathways. We found that IRF4, which is transcriptionally activated downstream of these pathways, is frequently mutated in ATL. IRF4 RNA, protein, and IRF4 transcriptional targets are uniformly elevated in HTLV-1-transformed cells and ATL cell lines, and IRF4 was bound to genomic regulatory DNA of many of these transcriptional targets in HTLV-1-transformed cell lines. We further noted that the K59R IRF4 mutant is expressed at higher levels in the nucleus than WT IRF4 and is transcriptionally more active. Expression of both WT and the K59R mutant of IRF4 from a constitutive promoter in retrovirally transduced murine bone marrow cells increased the abundance of T lymphocytes but not myeloid cells or B lymphocytes in mice. IRF4 may represent a therapeutic target in ATL because ATL cells select for a mutant of IRF4 with higher nuclear expression and transcriptional activity, and overexpression of IRF4 induces the expansion of T lymphocytes

Indexed as

MutationAdultAnimalsApoptosisCD28 AntigensCell NucleusCell Transformation, ViralCytosolDimerizationDNAExome SequencingGene Knockdown TechniquesGene Products, taxHEK293 CellsHumansHuman T-lymphotropic virus 1CD28 AntigensDNAGene Products, taxInterferon Regulatory Factor-4Interferon Regulatory FactorsNF-kappa BReceptors, Antigen, T-CellRNA, MessengerATLcancer biologychromatin immunoprecipitation (ChiP)driver mutationHTLVinterferon regulatory factor (IRF)NF-kappaB transcription factorretrovirus

Identifiers

PMID29540473
PMCPMC5936815
OpenAlexW2789242776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.