Evidence map›Paper›PMID 29535834›Full record

ArticleOncotarget2018

Innovative methodology for the identification of soluble biomarkers in fresh tissues.

Brunella Costanza, Andrei Turtoi, Akeila Bellahcène, Touko Hirano, Olivier Peulen, Arnaud Blomme, Vincent Hennequière, Eugene Mutijima, Jacques Boniver, Marie-Alice Meuwis and 16 more

Abstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Brunella Costanza *Metastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Andrei Turtoi *Metastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Akeila BellahcèneMetastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Touko HiranoLaboratory for Analytical Instruments, Gunma University Graduate School of Medicine, Gunma, Japan.
Olivier PeulenMetastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Arnaud BlommeMetastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Vincent HennequièreMetastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Eugene MutijimaDepartment of Pathology, University Hospital (CHU), University of Liège, Liège, Belgium.
Jacques BoniverDepartment of Pathology, University Hospital (CHU), University of Liège, Liège, Belgium.
Marie-Alice MeuwisGastroenterology Department, University Hospital (CHU), University of Liège, Liège, Belgium.
Claire JosseCenter for Human Genetic, Molecular Haemato-Oncology Unit, UniLab, University Hospital (CHU), University of Liège, Liège, Belgium.
Benjamin KoopmanschCenter for Human Genetic, Molecular Haemato-Oncology Unit, UniLab, University Hospital (CHU), University of Liège, Liège, Belgium.
Karin SegersCenter for Human Genetic, Molecular Haemato-Oncology Unit, UniLab, University Hospital (CHU), University of Liège, Liège, Belgium.
Takehiko YokoboriDivision of Integrated Oncology Research, Research Program for Omics-based Medical Science, Gunma University Initiative for Advanced Research, Gunma, Japan.
Karim FahmyMetastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.
Marc ThiryLaboratory of Cell Biology, Faculty of Sciences, University of Liège, Liège, Belgium.
Carla CoimbraDepartment of Abdominal Surgery, University Hospital (CHU), University of Liège, Liège, Belgium.
Nancy GarbackiLaboratory of Connective Tissues Biology, GIGA-Cancer, University Hospital, University of Liège, Liège, Belgium.
Alain ColigeLaboratory of Connective Tissues Biology, GIGA-Cancer, University Hospital, University of Liège, Liège, Belgium.
Dominique BaiwirMass Spectrometry Laboratory, University of Liège, Liège, Belgium.
Vincent BoursCenter for Human Genetic, Molecular Haemato-Oncology Unit, UniLab, University Hospital (CHU), University of Liège, Liège, Belgium.
Edouard LouisGastroenterology Department, University Hospital (CHU), University of Liège, Liège, Belgium.
Olivier DetryDepartment of Abdominal Surgery, University Hospital (CHU), University of Liège, Liège, Belgium.
Philippe DelvenneDepartment of Pathology, University Hospital (CHU), University of Liège, Liège, Belgium.
Masahiko NishiyamaDivision of Integrated Oncology Research, Research Program for Omics-based Medical Science, Gunma University Initiative for Advanced Research, Gunma, Japan.
Vincent CastronovoMetastasis Research Laboratory, GIGA Cancer, University of Liège, Liège, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of diagnostic and prognostic biomarkers from early lesions, measurable in liquid biopsies remains a major challenge, particularly in oncology. Fresh human material of high quality is required for biomarker discovery but is often not available when it is totally required for clinical pathology investigation. Hence, all OMICs studies are done on residual and less clinically relevant biological samples. Here after, we present an innovative, simple, and non-destructive, procedure named EXPEL that uses rapid, pressure-assisted, interstitial fluid extrusion, preserving the specimen for full routine clinical pathology investigation. In the meantime, the technique allows a comprehensive OMICs analysis (proteins, metabolites, miRNAs and DNA). As proof of concept, we have applied EXPEL on freshly collected human colorectal cancer and liver metastases tissues. We demonstrate that the procedure efficiently allows the extraction, within a few minutes, of a wide variety of biomolecules holding diagnostic and prognostic potential while keeping both tissue morphology and antigenicity unaltered. Our method enables, for the first time, both clinicians and scientists to explore identical clinical material regardless of its origin and size, which has a major positive impact on translation to the clinic.

Indexed as

biomarkersmetabolomicmiRNAsproteomictDNA

Identifiers

PMID29535834
PMCPMC5828218

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.