Evidence map›Paper›PMID 29535363›Full record

ArticleScientific reports2018

Transcriptomic analysis of transgressive segregants revealed the central role of photosynthetic capacity and efficiency in biomass accumulation in sugarcane.

Ratnesh Singh, Tyler Jones, Ching Man Wai, John Jifon, Chifumi Nagai, Ray Ming, Qingyi Yu

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ratnesh SinghTexas A&M AgriLife Research Center at Dallas, Texas A&M University System, Dallas, TX, 75252, USA.ORCID 0000-0001-5647-3390
Tyler JonesHawaii Agriculture Research Center, Kunia, HI, 96759, USA.
Ching Man WaiDepartment of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
John JifonTexas A&M AgriLife Research Center at Weslaco, Texas A&M University System, Weslaco, TX, 78596, USA.
Chifumi NagaiHawaii Agriculture Research Center, Kunia, HI, 96759, USA.
Ray MingDepartment of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Qingyi YuTexas A&M AgriLife Research Center at Dallas, Texas A&M University System, Dallas, TX, 75252, USA. qyu@ag.tamu.edu.ORCID 0000-0001-5393-5764

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sugarcane is among the most efficient crops in converting solar energy into chemical energy. However, due to its complex genome structure and inheritance, the genetic and molecular basis of biomass yield in sugarcane is still largely unknown. We created an F2 segregating population by crossing S. officinarum and S. spontaneum and evaluated the biomass yield of the F2 individuals. The F2 individuals exhibited clear transgressive segregation in biomass yield. We sequenced transcriptomes of source and sink tissues from 12 selected extreme segregants to explore the molecular basis of high biomass yield for future breeding of high-yielding energy canes. Among the 103,664 assembled unigenes, 10,115 and 728 showed significant differential expression patterns between the two extreme segregating groups in the top visible dewlap leaf and the 9

Indexed as

BiomassGene Expression ProfilingPhotosynthesisTranscriptomeAllelesBiological EvolutionComputational BiologyEnergy MetabolismGene Expression Regulation, PlantGene OntologyHigh-Throughput Nucleotide SequencingMetabolic Networks and PathwaysMolecular Sequence AnnotationSaccharum

Identifiers

PMID29535363
PMCPMC5849761

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.