Evidence map›Paper›PMID 29535152›Full record

ArticleMolecular pharmacology2018

Mapping the Allosteric Action of Antagonists A740003 and A438079 Reveals a Role for the Left Flipper in Ligand Sensitivity at P2X7 Receptors.

Rebecca C Allsopp, Sudad Dayl, Anfal Bin Dayel, Ralf Schmid, Richard J Evans

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Molecular pharmacology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  13. Review
  14. Review
  15. Article
  16. Fully Flexible Ligand Docking for the P2X7 Receptor Using ROSIE.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  17. Review
  18. Review
  19. Functional Coupling between the P2XInternational journal of molecular sciences · 2021
    Article
  20. The P2XFrontiers in cellular neuroscience · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Rebecca C AllsoppDepartment of Molecular and Cell Biology (R.C.A., S.D., A.B.D., R.S., R.J.E.) and Leicester Institute of Structural and Chemical Biology (R.S.), University of Leicester, Leicester, United Kingdom; and Department of Chemistry, College of Science, University of Baghdad, Baghdad, Iraq (S.D.).
Sudad DaylDepartment of Molecular and Cell Biology (R.C.A., S.D., A.B.D., R.S., R.J.E.) and Leicester Institute of Structural and Chemical Biology (R.S.), University of Leicester, Leicester, United Kingdom; and Department of Chemistry, College of Science, University of Baghdad, Baghdad, Iraq (S.D.).
Anfal Bin DayelDepartment of Molecular and Cell Biology (R.C.A., S.D., A.B.D., R.S., R.J.E.) and Leicester Institute of Structural and Chemical Biology (R.S.), University of Leicester, Leicester, United Kingdom; and Department of Chemistry, College of Science, University of Baghdad, Baghdad, Iraq (S.D.).
Ralf SchmidDepartment of Molecular and Cell Biology (R.C.A., S.D., A.B.D., R.S., R.J.E.) and Leicester Institute of Structural and Chemical Biology (R.S.), University of Leicester, Leicester, United Kingdom; and Department of Chemistry, College of Science, University of Baghdad, Baghdad, Iraq (S.D.).
Richard J EvansDepartment of Molecular and Cell Biology (R.C.A., S.D., A.B.D., R.S., R.J.E.) and Leicester Institute of Structural and Chemical Biology (R.S.), University of Leicester, Leicester, United Kingdom; and Department of Chemistry, College of Science, University of Baghdad, Baghdad, Iraq (S.D.) rje6@le.ac.uk.
Institute of Structural and Molecular Biology · GBUniversity of Baghdad · IQUniversity of Leicester · GB

Funding

Medical Research Council MR/K027018/1
6 · The paper itself

Abstract

P2X7 receptor (P2X7R) activation requires ∼100-fold higher concentrations of ATP than other P2X receptor (P2XR) subtypes. Such high levels are found during cellular stress, and P2X7Rs consequently contribute to a range of pathophysiological conditions. We have used chimeric and mutant P2X7Rs, coupled with molecular modeling, to produce a validated model of the binding mode of the subtype-selective antagonist A438079 at an intersubunit allosteric site. Within the allosteric site large effects on antagonist action were found for point mutants of residues F88A, D92A, F95A, and F103A that were conserved or similar between sensitive/insensitive P2XR subtypes, suggesting that these side-chain interactions were not solely responsible for high-affinity antagonist binding. Antagonist sensitivity was increased with mutations that remove the bulk of side chains around the center of the binding pocket, suggesting that the dimensions of the pocket make a significant contribution to selectivity. Chimeric receptors swapping the left flipper (around the orthosteric site) reduced both ATP and antagonist sensitivity. Point mutations within this region highlighted the contribution of a P2X7R-specific aspartic acid residue (D280) that modeling suggests forms a salt bridge with the lower body region of the receptor. The D280A mutant removing this charge increased ATP potency 15-fold providing a new insight into the low ATP sensitivity of the P2X7R. The ortho- and allosteric binding sites form either side of the

Indexed as

AcetamidesAllosteric RegulationAllosteric SiteAmino Acid SequenceBinding SitesHumansLigandsMolecular Docking SimulationPoint MutationPurinergic P2X Receptor AntagonistsPyridinesQuinolinesReceptors, Purinergic P2X7Sequence Homology, Amino AcidTetrazoles3-(5-(2,3-dichlorophenyl)-1H-tetrazol-1-yl)methylpyridineAcetamidesLigands(N-(1-(((cyanoimino)(5-quinolinylamino) methyl) amino)-2,2-dimethylpropyl)-2-(3,4-dimethoxyphenyl)acetamide)P2RX7 protein, humanPurinergic P2X Receptor AntagonistsPyridinesQuinolinesReceptors, Purinergic P2X7Tetrazoles

Identifiers

PMID29535152
PMCPMC5896373
OpenAlexW2793367826

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.