Evidence map›Paper›PMID 29534773›Full record

ArticleEpidemiology and infection2018

The changing HIV-1 genetic characteristics and transmitted drug resistance among recently infected population in Yunnan, China.

M Chen, M H Jia, Y L Ma, H B Luo, H C Chen, C J Yang, J Dai, L Yang, L J Dong, R Lu and 6 more

Abstract read
In one paragraph

Article in Epidemiology and infection, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

M ChenInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.ORCID 0000-0002-9699-7524
M H JiaInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
Y L MaInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
H B LuoInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
H C ChenInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
C J YangInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
J DaiInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
L YangInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
L J DongInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
R LuInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
L J SongInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
Y HanInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
J Y LuInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.
A K L CheungAIDS Institute and Department of Microbiology,Research Center for Infection and Immunity,Li Ka Shing Faculty of Medicine,The University of Hong Kong,Hong Kong SAR,China.ORCID 0000-0001-8989-0537
Z W ChenAIDS Institute and Department of Microbiology,Research Center for Infection and Immunity,Li Ka Shing Faculty of Medicine,The University of Hong Kong,Hong Kong SAR,China.
L LuInstitute for AIDS/STD Control and Prevention,Yunnan Center for Disease Control and Prevention,Kunming, Yunnan,China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multiple human immunodeficiency virus (HIV)-1 genotypes in China were first discovered in Yunnan Province before disseminating throughout the country. As the HIV-1 epidemic continues to expand in Yunnan, genetic characteristics and transmitted drug resistance (TDR) should be further investigated among the recently infected population. Among 2828 HIV-positive samples newly reported in the first quarter of 2014, 347 were identified as recent infections with BED-captured enzyme immunoassay (CEIA). Of them, 291 were successfully genotyped and identified as circulating recombinant form (CRF)08_BC (47.4%), unique recombinant forms (URFs) (18.2%), CRF01_AE (15.8%), CRF07_BC (14.4%), subtype C (2.7%), CRF55_01B (0.7%), subtype B (0.3%) and CRF64_BC (0.3%). CRF08_BC and CRF01_AE were the predominant genotypes among heterosexual and homosexual infections, respectively. CRF08_BC, URFs, CRF01_AE and CRF07_BC expanded with higher prevalence in central and eastern Yunnan. The recent common ancestor of CRF01_AE, CRF07_BC and CRF08_BC dated back to 1983.1, 1992.1 and 1989.5, respectively. The effective population sizes (EPS) for CRF01_AE and CRF07_BC increased exponentially during 1991-1999 and 1994-1999, respectively. The EPS for CRF08_BC underwent two exponential growth phases in 1994-1998 and 2001-2002. Lastly, TDR-associated mutations were identified in 1.8% of individuals. These findings not only enhance our understanding of HIV-1 evolution in Yunnan but also have implications for vaccine design and patient management strategies.

Indexed as

Disease Transmission, InfectiousDrug Resistance, ViralGenotypeAdolescentAdultAgedAged, 80 and overChinaCross-Sectional StudiesFemaleGenotyping TechniquesHIV-1HIV InfectionsHumansMaleMiddle AgedChinaHIV-1molecular epidemiologytransmitted drug resistanceYunnan

Identifiers

PMID29534773
PMCPMC9134363

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.