Evidence map›Paper›PMID 29534301›Full record

ArticleHepatology (Baltimore, Md.)2018

Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.

Nao Nishida, Masaya Sugiyama, Hiromi Sawai, Sohji Nishina, Aiko Sakai, Jun Ohashi, Seik-Soon Khor, Keisuke Kakisaka, Takayo Tsuchiura, Keisuke Hino and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 62 citations in OpenAlex.

  1. Trial
  2. Observational
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Vaccinomics and adversomics: key elements for a personalized vaccinology.Clinical and experimental vaccine research · 2024
    Review
  10. Article
  11. Towards personalized vaccines.Frontiers in immunology · 2024
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Associations ofVaccines · 2023
    Article
  18. Association between a low response to rubella vaccination and reduced anti-severe acute respiratory syndrome coronavirus 2 immune response after vaccination with BNT162b2: a cross-sectional study.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 1 country.

Nao NishidaGenome Medical Science Project, National Center for Global Health and Medicine, Ichikawa, Japan.
Masaya SugiyamaGenome Medical Science Project, National Center for Global Health and Medicine, Ichikawa, Japan.
Hiromi SawaiDepartment of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Japan.
Sohji NishinaDepartment of Hepatology and Pancreatology, Kawasaki Medical School, Okayama, Japan.
Aiko SakaiDepartment of Child Health, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Jun OhashiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Japan.
Seik-Soon KhorDepartment of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Japan.
Keisuke KakisakaDivision of Hepatology, Department of Internal Medicine, Iwate Medical University, Morioka, Japan.ORCID 0000-0001-9627-138X
Takayo TsuchiuraGenome Medical Science Project, National Center for Global Health and Medicine, Ichikawa, Japan.
Keisuke HinoDepartment of Hepatology and Pancreatology, Kawasaki Medical School, Okayama, Japan.
Ryo SumazakiDepartment of Child Health, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Yasuhiro TakikawaDivision of Hepatology, Department of Internal Medicine, Iwate Medical University, Morioka, Japan.
Kazumoto MurataGenome Medical Science Project, National Center for Global Health and Medicine, Ichikawa, Japan.
Tatsuo KandaDepartment of Gastroenterology and Nephrology, Graduate School of Medicine, Chiba University, Chiba, Japan.ORCID 0000-0002-9565-4669
Osamu YokosukaDepartment of Gastroenterology and Nephrology, Graduate School of Medicine, Chiba University, Chiba, Japan.
Katsushi TokunagaDepartment of Human Genetics, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Japan.
Masashi MizokamiGenome Medical Science Project, National Center for Global Health and Medicine, Ichikawa, Japan.
National Center for Global Health and Medicine · JPThe University of Tokyo · JPChiba University · JPIwate Medical University · JPKawasaki Medical School · JPUniversity of Tsukuba · JP

Funding

PUBLIC HEALTH DEMONSTRATIONP60DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MYERS, MARTIN G · 1985 to 2012
$26.5M
Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Pilot and Feasibility (P and F) ProgramP30DK089503 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Kanakadurga Singer · 2010 to 2026
$20.3M
Keratin Biology and Disease Aspects in Simple EpitheliaR01DK047918 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OMARY, BISHR · 1995 to 2018
$6.6M
Significance and mechanisms of hepatic ChREBPα induction via post-translational modifications in diet-induced NASHR01DK099593 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI YIN, LEI · 2014 to 2025
$4.5M
Japan Agency for Medical Research and Development 16fk021010h0001Japan Agency for Medical Research and Development H26-kanenjitsu-kanen-ippan-004Japan Agency for Medical Research and Development JP16kk0205007Japan Agency for Medical Research and Development JP16km0405205Japan Agency for Medical Research and Development JP17fk0210302Japan Agency for Medical Research and Development JP17fk0310115Japan Society for the Promotion of Science 16K09387National Center for Global Health and Medicine 26-shi-108National Center for Global Health and Medicine 28-shi-001National Center for Global Health and Medicine 28-shi-1302NIDDK NIH HHS DK020572NIDDK NIH HHS DK089503NIDDK NIH HHS DK099593NIDDK NIH HHS DK47918NIDDK NIH HHS P30 DK020572NIDDK NIH HHS P30 DK089503NIDDK NIH HHS P60 DK020572NIDDK NIH HHS R01 DK047918NIDDK NIH HHS R01 DK099593
6 · The paper itself

Abstract

Approximately 5-10% of individuals who are vaccinated with a hepatitis B (HB) vaccine designed based on the hepatitis B virus (HBV) genotype C fail to acquire protective levels of antibodies. Here, host genetic factors behind low immune response to this HB vaccine were investigated by a genome-wide association study (GWAS) and Human Leukocyte Antigen (HLA) association tests. The GWAS and HLA association tests were carried out using a total of 1,193 Japanese individuals including 107 low responders, 351 intermediate responders, and 735 high responders. Classical HLA class II alleles were statistically imputed using the genome-wide SNP typing data. The GWAS identified independent associations of HLA-DRB1-DQB1, HLA-DPB1 and BTNL2 genes with immune response to a HB vaccine designed based on the HBV genotype C. Five HLA-DRB1-DQB1 haplotypes and two DPB1 alleles showed significant associations with response to the HB vaccine in a comparison of three groups of 1,193 HB vaccinated individuals. When frequencies of DRB1-DQB1 haplotypes and DPB1 alleles were compared between low immune responders and HBV patients, significant associations were identified for three DRB1-DQB1 haplotypes, and no association was identified for any of the DPB1 alleles. In contrast, no association was identified for DRB1-DQB1 haplotypes and DPB1 alleles in a comparison between high immune responders and healthy individuals. Conclusion: The findings in this study clearly show the importance of HLA-DR-DQ (i.e., recognition of a vaccine related HB surface antigen (HBsAg) by specific DR-DQ haplotypes) and BTNL2 molecules (i.e., high immune response to HB vaccine) for response to a HB vaccine designed based on the HBV genotype C. (Hepatology 2018).

Indexed as

AdultButyrophilinsFemaleGenome-Wide Association StudyHepatitis B VaccinesHepatitis B virusHLA-DRB1 ChainsHumansMaleMiddle AgedYoung AdultBTNL2 protein, humanButyrophilinsHepatitis B VaccinesHLA-DRB1 Chains

Identifiers

PMID29534301
PMCPMC6175380
OpenAlexW2790268696

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.