Evidence map›Paper›PMID 29533181›Full record

ArticleeLife2018

NuRD and CAF-1-mediated silencing of the D4Z4 array is modulated by DUX4-induced MBD3L proteins.

Amy E Campbell, Sean C Shadle, Sujatha Jagannathan, Jong-Won Lim, Rebecca Resnick, Rabi Tawil, Silvère M van der Maarel, Stephen J Tapscott

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Amy E CampbellHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, United States.ORCID 0000-0001-6513-5836
Sean C ShadleHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
Sujatha JagannathanHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, United States.ORCID 0000-0001-9039-2631
Jong-Won LimHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
Rebecca ResnickHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, United States.ORCID 0000-0001-5804-4418
Rabi TawilDepartment of Neurology, University of Rochester Medical Center, Rochester, United States.
Silvère M van der MaarelDepartment of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.
Stephen J TapscottHuman Biology Division, Fred Hutchinson Cancer Research Center, Seattle, United States.ORCID 0000-0002-0319-0968
Fred Hutch Cancer Center · USUniversity of Washington · USLeiden University Medical Center · NLUniversity of Rochester Medical Center · US

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
MYOTONIC DYSTROPHY LOCUS CONTROLR01AR045203 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 1998 to 2025
$9.4M
Chromosome Metabolism and Cancer Training GrantT32CA009657 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 1991 to 2020
$7.6M
INTERDISCIPLINARY TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007183 · NICHD · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2015
$5.7M
SMCHD1 Pathways as Candidate Targets for FSHDR01AR066248 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2014 to 2024
$4.5M
NCI NIH HHS T32 CA009657NCI NIH HHS T32CA009657NHGRI NIH HHS T32 HG000035NHGRI NIH HHS T32HG000035NHGRI NIH HHS T32HG00035NIAMS NIH HHS R01 AR045203NIAMS NIH HHS R01AR045203NIAMS NIH HHS R01 AR066248NIAMS NIH HHS R01AR066248NICHD NIH HHS T32 HD007183NICHD NIH HHS T32HD007183NIGMS NIH HHS T32 GM007266NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32GM007270NINDS NIH HHS P01 NS069539NINDS NIH HHS P01NS069539
6 · The paper itself

Abstract

The DUX4 transcription factor is encoded by a retrogene embedded in each unit of the D4Z4 macrosatellite repeat. DUX4 is normally expressed in the cleavage-stage embryo, whereas chromatin repression prevents DUX4 expression in most somatic tissues. Failure of this repression causes facioscapulohumeral muscular dystrophy (FSHD) due to mis-expression of DUX4 in skeletal muscle. In this study, we used CRISPR/Cas9 engineered chromatin immunoprecipitation (enChIP) locus-specific proteomics to characterize D4Z4-associated proteins. These and other approaches identified the Nucleosome Remodeling Deacetylase (NuRD) and Chromatin Assembly Factor 1 (CAF-1) complexes as necessary for DUX4 repression in human skeletal muscle cells and induced pluripotent stem (iPS) cells. Furthermore, DUX4-induced expression of MBD3L proteins partly relieved this repression in FSHD muscle cells. Together, these findings identify NuRD and CAF-1 as mediators of DUX4 chromatin repression and suggest a mechanism for the amplification of DUX4 expression in FSHD muscle cells.

Indexed as

Epigenesis, GeneticChromatinChromatin Assembly Factor-1Clustered Regularly Interspaced Short Palindromic RepeatsGene Expression Regulation, DevelopmentalGene SilencingHomeodomain ProteinsHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexMuscle Fibers, SkeletalMuscle, SkeletalMuscular Dystrophy, FacioscapulohumeralNucleosomesCHAF1A protein, humanChromatinChromatin Assembly Factor-1DUX4L1 protein, humanHomeodomain ProteinsMi-2 Nucleosome Remodeling and Deacetylase ComplexNucleosomesCAF-1chromosomesD4Z4DUX4facioscapulohumeral dystrophygeneshumanMBD3LNuRD

Identifiers

PMID29533181
PMCPMC5849414
OpenAlexW2791198379

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.