Evidence map›Paper›PMID 29532429›Full record

ArticleMolecular diversity2018

A new computational model for the prediction of toxicity of phosphonate derivatives using QSPR.

Rosa L Camacho-Mendoza, Eliazar Aquino-Torres, Viviana Cordero-Pensado, Julián Cruz-Borbolla, José G Alvarado-Rodríguez, Pandiyan Thangarasu, Carlos Z Gómez-Castro

Abstract read
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In one paragraph

Article in Molecular diversity, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rosa L Camacho-MendozaÁrea Académica de Química, Universidad Autónoma del Estado de Hidalgo, Ciudad del Conocimiento, km 4.5 Carretera Pachuca-Tulancingo, C.P. 42184, Mineral de la Reforma Hidalgo, Mexico.
Eliazar Aquino-TorresÁrea Académica de Química, Universidad Autónoma del Estado de Hidalgo, Ciudad del Conocimiento, km 4.5 Carretera Pachuca-Tulancingo, C.P. 42184, Mineral de la Reforma Hidalgo, Mexico.
Viviana Cordero-PensadoÁrea Académica de Química, Universidad Autónoma del Estado de Hidalgo, Ciudad del Conocimiento, km 4.5 Carretera Pachuca-Tulancingo, C.P. 42184, Mineral de la Reforma Hidalgo, Mexico.
Julián Cruz-BorbollaÁrea Académica de Química, Universidad Autónoma del Estado de Hidalgo, Ciudad del Conocimiento, km 4.5 Carretera Pachuca-Tulancingo, C.P. 42184, Mineral de la Reforma Hidalgo, Mexico. jcruz@uaeh.edu.mx.
José G Alvarado-RodríguezÁrea Académica de Química, Universidad Autónoma del Estado de Hidalgo, Ciudad del Conocimiento, km 4.5 Carretera Pachuca-Tulancingo, C.P. 42184, Mineral de la Reforma Hidalgo, Mexico.
Pandiyan ThangarasuFacultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, C.P. 04510, Mexico City, Mexico.
Carlos Z Gómez-CastroUniversidad Autónoma del Estado de Hidalgo, Ciudad del Conocimiento, C.P. 42184, Mineral de la Reforma, Hidalgo, Mexico.
Universidad Autónoma del Estado de Hidalgo · MXUniversidad Nacional Autónoma de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural and electronic properties of a series of 25 phosphonate derivatives were analyzed applying density functional theory, with the exchange-correlation functional PBEPBE in combination with the 6-311++G** basis set for all atoms. The chemical reactivity of these derivatives has been interpreted using quantum descriptors such as frontier molecular orbitals (HOMO, LUMO), Hirshfeld charges, molecular electrostatic potential, and the dual descriptor [[Formula: see text]]. These descriptors are directly related to experimental median lethal dose ([Formula: see text], expressed as its decimal logarithm [[Formula: see text]([Formula: see text]] through a multiple linear regression equation. The proposed model predicts the toxicity of phosphonates in function of the volume (V), the load of the most electronegative atom of the molecule (q), and the eigenvalue of the molecular orbital HOMO ([Formula: see text]. The obtained values in the internal validation of the model are: [Formula: see text]%, [Formula: see text]%, [Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text], [Formula: see text], and [Formula: see text]%. The toxicity of nine phosphonate derivatives used as test molecules was adequately predicted by the model. The theoretical results indicate that the oxygen atom of the O=P group plays an important role in the interaction mechanism between the phosphonate and the acetylcholinesterase enzyme, inhibiting the removal of the proton of the ser-200 residue by the his-440 residue.

Indexed as

Computer SimulationQuantitative Structure-Activity RelationshipElectronsLethal Dose 50Models, MolecularMolecular ConformationOrganophosphonatesOrganophosphonatesAcetylcholinesteraseDFTPhosphonatesQSARQSPRQuantum chemical descriptorToxicity

Identifiers

PMID29532429
OpenAlexW2793826438

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.