Evidence map›Paper›PMID 29532370›Full record

ArticleEnvironmental science and pollution research international2018

Bacterial community changes in response to oil contamination and perennial crop cultivation.

Lijuan Yan, Petri Penttinen, Anu Mikkonen, Kristina Lindström

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Article in Environmental science and pollution research international, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lijuan YanDepartment of Environmental Sciences, University of Helsinki, PO Box 65, FI-00014, Helsinki, Finland.
Petri PenttinenDepartment of Environmental Sciences, University of Helsinki, PO Box 65, FI-00014, Helsinki, Finland. petri.penttinen@helsinki.fi.ORCID http://orcid.org/0000-0002-9203-9484
Anu MikkonenDepartment of Biological and Environmental Science, University of Jyväskylä, PO Box 35, FI-40014, Jyväskylä, Finland.
Kristina LindströmDepartment of Environmental Sciences, University of Helsinki, PO Box 65, FI-00014, Helsinki, Finland.

Funding

Seventh Framework Programme 245216
6 · The paper itself

Abstract

We investigated bacterial community dynamics in response to used motor oil contamination and perennial crop cultivation by 16S rRNA gene amplicon sequencing in a 4-year field study. Actinobacteria, Proteobacteria, Chloroflexi, Acidobacteria, and Gemmatimonadetes were the major bacterial phyla, and Rhodococcus was the most abundant genus. Initially, oil contamination decreased the overall bacterial diversity. Actinobacteria, Betaproteobacteria, and Gammaproteobacteria were sensitive to oil contamination, exhibiting clear succession with time. However, bacterial communities changed over time, regardless of oil contamination and crop cultivation. The abundance difference of most OTUs between oil-contaminated and non-contaminated plots remained the same in later sampling years after the initial abundance difference induced by oil spike. The abundances of three oil-favored actinobacteria (Lysinimonas, Microbacteriaceae, and Marmoricola) and one betaproteobacterium (Aquabacterium) changed in different manner over time in oil-contaminated and non-contaminated soil. We propose that these taxa are potential bio-indicators for monitoring recovery from motor oil contamination in boreal soil. The effect of crop cultivation on bacterial communities became significant only after the crops achieved stable growth, likely associated with plant material decomposition by Bacteroidetes, Armatimonadetes and Fibrobacteres.

Indexed as

Soil MicrobiologyAcidobacteriaActinobacteriaBacteriaBacteroidetesChloroflexiEnvironmental MonitoringPetroleumPhylogenyProteobacteriaRNA, Ribosomal, 16SSoilSoil PollutantsPetroleumRNA, Ribosomal, 16SSoilSoil Pollutants16S rRNA gene amplicon sequencingBioremediationHydrocarbon contaminationPerennial crop cultivationSoil microbiomeTemporal abundance change

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.