Evidence map›Paper›PMID 29532116›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

An NB-LRR gene, TYNBS1, is responsible for resistance mediated by the Ty-2 Begomovirus resistance locus of tomato.

Hirotaka Yamaguchi, Jun Ohnishi, Atsushi Saito, Akio Ohyama, Tsukasa Nunome, Koji Miyatake, Hiroyuki Fukuoka

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 105 citations in OpenAlex.

  1. A dominant mutation in tomato DNA POLYMERASE DELTA 1 causes geminivirus DNA replication catastrophe.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Elucidation of theFrontiers in plant science · 2026
    Article
  4. Ey-1 encodes a DEDDh exonuclease in eggplant (Solanum melongena), providing a novel pathway for begomovirus resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  5. Article
  6. A TIR-NLR gene from Arabidopsis Pla-1 confers resistance to geminivirus infection.The Plant journal : for cell and molecular biology · 2025
    Article
  7. Article
  8. Molecular breeding of tomato: Advances and challenges.Journal of integrative plant biology · 2025
    Review
  9. The tomato gene Ty-6, encoding DNA polymerase delta subunit 1, confers broad resistance to Geminiviruses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  10. Marker assisted pyramiding of major resistance genes of tomato leaf curl and late blight diseases for stabilising tomato production.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Exploring the source of TYLCV resistance inFrontiers in plant science · 2024
    Article
  15. Article
  16. Advances and Prospects of Virus-Resistant Breeding in Tomatoes.International journal of molecular sciences · 2023
    Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hirotaka YamaguchiInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan. hyamagu@affrc.go.jp.ORCID http://orcid.org/0000-0003-1221-5554
Jun OhnishiInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan.
Atsushi SaitoInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan.
Akio OhyamaInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan.
Tsukasa NunomeInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan.
Koji MiyatakeInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan.
Hiroyuki FukuokaInstitute of Vegetable and Floriculture Science, NARO, 360 Kusawa, Ano-cho, Tsu, Mie, 514-2392, Japan.
Institute of Vegetable and Floriculture Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageAn NB-LRR gene, TYNBS1, was isolated from Begomovirus-resistance locus Ty-2. Transgenic plant analysis revealed that TYNBS1 is a functional resistance gene. TYNBS1 is considered to be synonymous with Ty-2. Tomato yellow leaf curl disease caused by Tomato yellow leaf curl virus (TYLCV) is a serious threat to tomato (Solanum lycopersicum L.) production worldwide. A Begomovirus resistance gene, Ty-2, was introduced into cultivated tomato from Solanum habrochaites by interspecific crossing. To identify the Ty-2 gene, we performed genetic analysis. Identification of recombinant line 3701 confirmed the occurrence of a chromosome inversion in the Ty-2 region of the resistant haplotype. Genetic analysis revealed that the Ty-2 gene is linked to an introgression encompassing two markers, SL11_25_54277 and repeat A (approximately 200 kb). Genomic sequences of the upper and lower border of the inversion section of susceptible and resistant haplotypes were determined. Two nucleotide-binding domain and leucine-rich repeat-containing (NB-LRR) genes, TYNBS1 and TYNBS2, were identified around the upper and lower ends of the inversion section, respectively. TYNBS1 strictly co-segregated with TYLCV resistance, whereas TYNBS2 did not. Genetic introduction of genomic fragments containing the TYNBS1 gene into susceptible tomato plants conferred TYLCV resistance. These results demonstrate that TYNBS1 is a functional resistance gene for TYLCV, and is synonymous with the Ty-2 gene.

Indexed as

BegomovirusGenes, PlantChromosome InversionChromosome MappingDisease ResistanceGenotypeHaplotypesPlant DiseasesPlants, Genetically ModifiedSolanum lycopersicum

Identifiers

PMID29532116
OpenAlexW2794285634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.