Evidence map›Paper›PMID 29531287›Full record

ArticleNature structural & molecular biology2018

Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.

Elizabeth L Guenther, Peng Ge, Hamilton Trinh, Michael R Sawaya, Duilio Cascio, David R Boyer, Tamir Gonen, Z Hong Zhou, David S Eisenberg

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Review
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  15. Review
  16. AnAnnals of medicine · 2023
    Article
  17. Lipid-induced polymorphic amyloid fibril formation by α-synuclein.Protein science : a publication of the Protein Society · 2023
    Article
  18. Article
  19. Review
  20. Aging can transform single-component protein condensates into multiphase architectures.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elizabeth L GuentherHoward Hughes Medical Institute, University of California, Los Angeles, Los Angeles, CA, USA.
Peng GeElectron Imaging Center for Nanomachines, California Nano Systems Institute, University of California, Los Angeles, Los Angeles, CA, USA.
Hamilton TrinhHoward Hughes Medical Institute, University of California, Los Angeles, Los Angeles, CA, USA.ORCID 0000-0002-9927-6060
Michael R SawayaHoward Hughes Medical Institute, University of California, Los Angeles, Los Angeles, CA, USA.
Duilio CascioHoward Hughes Medical Institute, University of California, Los Angeles, Los Angeles, CA, USA.
David R BoyerHoward Hughes Medical Institute, University of California, Los Angeles, Los Angeles, CA, USA.
Tamir GonenHoward Hughes Medical Institute, Janelia Research Campus, Ashburn, VA, USA.
Z Hong ZhouMolecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA.
David S EisenbergHoward Hughes Medical Institute, University of California, Los Angeles, Los Angeles, CA, USA. david@mbi.ucla.edu.ORCID 0000-0003-2432-5419

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
Structure and Inhibition of Amyloid in Alzheimer's DiseaseRF1AG054022 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EISENBERG, DAVID · 2016 to 2018
$4.2M
Structural Biology of Amyloid DiseaseR01AG029430 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EISENBERG, DAVID · 2007 to 2016
$3.9M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR023057NIA NIH HHS R01 AG029430NIA NIH HHS RF1 AG054022NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM071940NIGMS NIH HHS U24 GM116792
6 · The paper itself

Abstract

Proteins in the fibrous amyloid state are a major hallmark of neurodegenerative disease. Understanding the multiple conformations, or polymorphs, of amyloid proteins at the molecular level is a challenge of amyloid research. Here, we detail the wide range of polymorphs formed by a segment of human TAR DNA-binding protein 43 (TDP-43) as a model for the polymorphic capabilities of pathological amyloid aggregation. Using X-ray diffraction, microelectron diffraction (MicroED) and single-particle cryo-EM, we show that the

Indexed as

Amino Acid MotifsPolymorphism, GeneticAmyloidAmyloidogenic ProteinsCryoelectron MicroscopyCrystallizationDNA-Binding ProteinsHumansMicroscopy, Electron, TransmissionNeurodegenerative DiseasesPeptidesX-Ray DiffractionAmyloidAmyloidogenic ProteinsDNA-Binding ProteinsPeptidesTARDBP protein, human

Identifiers

PMID29531287
PMCPMC6056015

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.