Evidence map›Paper›PMID 29531047›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Noncatalytic aspartate at the exonuclease domain of proofreading DNA polymerases regulates both degradative and synthetic activities.

Alicia Del Prado, Elsa Franco-Echevarría, Beatriz González, Luis Blanco, Margarita Salas, Miguel de Vega

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. The proofreading mechanism of the human leading-strand DNA polymerase ε holoenzyme.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Alicia Del PradoInstituto de Biología Molecular "Eladio Viñuela," Consejo Superior de Investigaciones Cientificas (CSIC), Centro de Biología Molecular "Severo Ochoa," (CSIC-Universidad Autónoma de Madrid), Cantoblanco, 28049 Madrid, Spain.
Elsa Franco-EchevarríaDepartment of Crystallography and Structural Biology, Instituto de Química Física "Rocasolano," (CSIC) 28006 Madrid, Spain.
Beatriz GonzálezDepartment of Crystallography and Structural Biology, Instituto de Química Física "Rocasolano," (CSIC) 28006 Madrid, Spain.
Luis BlancoInstituto de Biología Molecular "Eladio Viñuela," Consejo Superior de Investigaciones Cientificas (CSIC), Centro de Biología Molecular "Severo Ochoa," (CSIC-Universidad Autónoma de Madrid), Cantoblanco, 28049 Madrid, Spain.
Margarita SalasInstituto de Biología Molecular "Eladio Viñuela," Consejo Superior de Investigaciones Cientificas (CSIC), Centro de Biología Molecular "Severo Ochoa," (CSIC-Universidad Autónoma de Madrid), Cantoblanco, 28049 Madrid, Spain; msalas@cbm.csic.es mdevega@cbm.csic.es.ORCID 0000-0001-5939-3441
Miguel de VegaInstituto de Biología Molecular "Eladio Viñuela," Consejo Superior de Investigaciones Cientificas (CSIC), Centro de Biología Molecular "Severo Ochoa," (CSIC-Universidad Autónoma de Madrid), Cantoblanco, 28049 Madrid, Spain; msalas@cbm.csic.es mdevega@cbm.csic.es.ORCID 0000-0003-1285-7549
Consejo Superior de Investigaciones Científicas · ESInstituto de Química Física Blas Cabrera · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most replicative DNA polymerases (DNAPs) are endowed with a 3'-5' exonuclease activity to proofread the polymerization errors, governed by four universally conserved aspartate residues belonging to the Exo I, Exo II, and Exo III motifs. These residues coordinate the two metal ions responsible for the hydrolysis of the last phosphodiester bond of the primer strand. Structural alignment of the conserved exonuclease domain of DNAPs from families A, B, and C has allowed us to identify an additional and invariant aspartate, located between motifs Exo II and Exo III. The importance of this aspartate has been assessed by site-directed mutagenesis at the corresponding Asp

Indexed as

DNA RepairDNA ReplicationMutationAmino Acid SequenceAspartic AcidBacillus PhagesDNA-Directed DNA PolymeraseExodeoxyribonucleasesMutagenesis, Site-DirectedSequence HomologyAspartic AcidDNA-Directed DNA PolymeraseExodeoxyribonucleases3′-5′ exonucleaseDNA polymerasesite-directed mutagenesis

Identifiers

PMID29531047
PMCPMC5879684
OpenAlexW2790482139

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.