Evidence map›Paper›PMID 29531038›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Transcriptome landscape of a bacterial pathogen under plant immunity.

Tatsuya Nobori, André C Velásquez, Jingni Wu, Brian H Kvitko, James M Kremer, Yiming Wang, Sheng Yang He, Kenichi Tsuda

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
37.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 256 citations in OpenAlex.

  1. Review
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  7. Two ferric uptake regulator proteins inApplied and environmental microbiology · 2026
    Article
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  11. The two-component regulator CvsR has a small core regulonbioRxiv : the preprint server for biology · 2025
    Article
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  13. Review
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  18. Review
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43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Tatsuya NoboriDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.
André C VelásquezMichigan State University-Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824.
Jingni WuDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.
Brian H KvitkoMichigan State University-Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824.
James M KremerMichigan State University-Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824.
Yiming WangDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.ORCID 0000-0003-0513-9039
Sheng Yang HeMichigan State University-Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824; hes@msu.edu tsuda@mpipz.mpg.de.
Kenichi TsudaDepartment of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany; hes@msu.edu tsuda@mpipz.mpg.de.ORCID 0000-0001-7074-0731
Max Planck Institute for Plant Breeding Research · DEMichigan State University · USResearch Triangle Park Foundation · US

Funding

Innate immunity-associated recycling endosome in Arabidopsis and pathogen attackR01GM109928 · NIGMS · MICHIGAN STATE UNIVERSITY · PI HE, SHENG YANG · 2015 to 2018
$1.1M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM109928
6 · The paper itself

Abstract

Plant pathogens can cause serious diseases that impact global agriculture. The plant innate immunity, when fully activated, can halt pathogen growth in plants. Despite extensive studies into the molecular and genetic bases of plant immunity against pathogens, the influence of plant immunity in global pathogen metabolism to restrict pathogen growth is poorly understood. Here, we developed RNA sequencing pipelines for analyzing bacterial transcriptomes

Indexed as

Gene Expression Regulation, BacterialTranscriptomeArabidopsisBacterial ProteinsGene Expression ProfilingGene Regulatory NetworksPlant DiseasesPlant ImmunityPlants, Genetically ModifiedPseudomonas syringaeBacterial Proteinsiron responsemicrobiomeplant hormoneplant immunitytype III effector

Identifiers

PMID29531038
PMCPMC5879711
OpenAlexW2791224469

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.