Evidence map›Paper›PMID 29530077›Full record

ArticleParasites & vectors2018

Microarray analysis of long non-coding RNA expression profiles uncovers a Toxoplasma-induced negative regulation of host immune signaling.

Wenquan Liu, Liyang Huang, Qimei Wei, Yu Zhang, Shengnan Zhang, Wenting Zhang, Liya Cai, Shaohui Liang

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Unveiling the Hidden Regulators: The Impact of lncRNAs on Zoonoses.International journal of molecular sciences · 2024
    Review
  4. Article
  5. Article
  6. Review
  7. Frontiers in immunology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Decoding LncRNAs.Cancers · 2021
    Review
  12. Article
  13. Frontiers in microbiology · 2021
    Article
  14. Functional Intricacy and Symmetry of Long Non-Coding RNAs in Parasitic Infections.Frontiers in cellular and infection microbiology · 2021
    Review
  15. Article
  16. miRNAs and lncRNAs inInternational journal of molecular sciences · 2020
    Review
  17. Article
  18. Review
  19. Impact ofFrontiers in cellular and infection microbiology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wenquan LiuDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Liyang HuangDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Qimei WeiDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Yu ZhangDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Shengnan ZhangDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Wenting ZhangDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Liya CaiDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China.
Shaohui LiangDepartment of Parasitology, Wenzhou Medical University, Wenzhou, Zhejiang Province, China. lsh@wmu.edu.cn.
Wenzhou Medical University · CN

Funding

the Commonweal Technology Application Project of Zhejiang Province 2015C33101the National Natural Science Foundation of China 81572029the Natural Science Foundation of Zhejiang Province LY13C080001the Technology Application Project of Wenzhou City Y20170022
6 · The paper itself

Abstract

backgroundToxoplasma gondii is an obligate intracellular protozoan parasite that can infect mammalian cells and thereby regulate host gene expression. The long non-coding RNAs (lncRNAs) have been demonstrated to be an important class of RNA molecules that regulate many biological processes, including host-pathogen interactions. However, the role of host lncRNAs in the response to T. gondii infection remains largely unknown.

methodsWe applied a microarray approach to determine the differential expression profiles of both lncRNAs and mRNAs in the human foreskin fibroblast (HFF) cells after T. gondii infection. The Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to reveal the potential functions of T. gondii-induced genes. Based on the co-expression networks of lncRNAs and immune-related genes, the role of NONSHAT022487 on the regulation of UNC93B1 related immune signaling was investigated by the knockdown and over-expression of lncRNA in human macrophage derived from the PMA-induced promonocytic cell line THP-1.

resultsOur data showed that 996 lncRNAs and 109 mRNAs in HFF cells were significantly and differentially expressed following T. gondii infection (fold change ≥ 5, P < 0.05). The results from the GO and KEGG pathway analyses indicated that the mRNAs with differential expression were mainly involved in the host immune response. Remarkably, we identified a novel lncRNA, NONSHAT022487, which suppresses the expression of the immune-related molecule UNC93B1. After T. gondii infection, NONSHAT022487 impaired the secretion of the cytokines IL-12, TNF-α, IL-1β and IFN-γ by downregulating UNC93B1 expression in human macrophage cells.

conclusionsOur study identified infection-induced lncRNA expression as a novel mechanism by which the Toxoplasma parasite regulates host immune signaling, which advances our understanding of the interaction of T. gondii parasites and host cells.

Indexed as

CytokinesDown-RegulationFibroblastsForeskinGene Expression ProfilingGene Expression RegulationHost-Pathogen InteractionsHumansMaleMicroarray AnalysisRNA, Long NoncodingRNA, MessengerSequence Analysis, RNASignal TransductionToxoplasmaCytokinesRNA, Long NoncodingRNA, MessengerImmune signalingLong non-coding RNAMicroarrayToxoplasma gondiiUNC93B1

Identifiers

PMID29530077
PMCPMC5848448
OpenAlexW2805986291

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.