Evidence map›Paper›PMID 29530000›Full record

ArticleBMC oral health2018

Relationship between the genetic polymorphisms of vicR and vicK Streptococcus mutans genes and early childhood caries in two-year-old children.

Pei Lin Zhuang, Li Xia Yu, Juan Kun Liao, Yan Zhou, Huan Cai Lin

Open access · goldAbstract read
In one paragraph

Article in BMC oral health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pei Lin ZhuangGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Department of Stomatology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, 107 Yanjian Road West, Guangzhou, 510120, China.
Li Xia YuGuangdong Provincial Key Laboratory of Stomatology, Sun Yat-Sen University, 74 2nd Zhongshan Road, Guangzhou, 510055, China.
Juan Kun LiaoGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Department of Stomatology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, 107 Yanjian Road West, Guangzhou, 510120, China.
Yan ZhouGuangdong Provincial Key Laboratory of Stomatology, Sun Yat-Sen University, 74 2nd Zhongshan Road, Guangzhou, 510055, China.
Huan Cai LinGuangdong Provincial Key Laboratory of Stomatology, Sun Yat-Sen University, 74 2nd Zhongshan Road, Guangzhou, 510055, China. linhcgz@126.com.ORCID 0000-0002-7222-5570
Sun Yat-sen University · CN

Funding

Guangdong Provincial Science and Technology Plan Project, China 2014A020212092Guangdong Provincial Science and Technology Plan Project, China 2016A020215067Medical Scientific Research Foundation of Guangdong Province, China A2015419
6 · The paper itself

Abstract

backgroundThe VicRK two-component signalling system regulates virulence and cariogenicity in Streptococcus mutans (S. mutans). The purpose of this study was to explore the genetic polymorphisms of the vicR and vicK genes, which are associated with dental caries in children with S. mutans.

methodsIn this study, 121 (from each group) clinical S. mutans strains were isolated from caries-free children and children with high-severity caries to sequence the vicR and vicK genes. Genomic DNA was extracted from S. mutans strains and amplified using PCR. The PCR products were purified and sequenced. A chi-squared test and ABI Variant Reporter software were used to analyse the sequencing results.

resultsThe 242 clinically isolated S. mutans strains contained the full-length vicR and vicK genes. No nucleotide sequence insertions or deletions were observed in the two genes. Four silent point mutations were identified in the vicR genes, and no missense mutations could be detected. Forty-one mutations were identified in the vicK genes. In addition to 32 silent mutations, 9 missense mutations at the 173, 337, 470, 1051, 1132, 1258, 1260, 1277, and 1348 bp positions were found. The distribution frequencies of the missense mutations were not significantly different between the groups, except for the C470T mutation. The frequency of the C470T missense mutation was higher in the high-severity caries group than in the caries-free group.

conclusionsvicR sequences are highly conserved in S. mutans clinical isolates. The locus 470 missense mutation of the vicK gene may be related to caries in children with S. mutans.

Indexed as

Bacterial ProteinsChild, PreschoolDental CariesGenes, BacterialHumansMutation, MissensePoint MutationPolymerase Chain ReactionPolymorphism, GeneticSequence Analysis, DNASilent MutationStreptococcus mutansBacterial ProteinsYycF protein, BacteriaDental cariesGenetic polymorphismMissense mutationStreptococcus mutans

Identifiers

PMID29530000
PMCPMC5848541
OpenAlexW2807676609

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.