ArticleNucleic acids research2018
Metaviz: interactive statistical and visual analysis of metagenomic data.
Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 4 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed, 4 syntheses or guidelines pooled it.
- The effects of field-based repeatedsprint training on physical performance in soccer players: a systematic review and multilevel meta-analysis.Frontiers in physiology · 2026Pooled it
- Pooled it
- Cardiorespiratory fitness, body mass index and mortality: a systematic review and meta-analysis.British journal of sports medicine · 2025Pooled it
- A multilevel meta-analysis of the effects of repeated sprint training in hypoxia on athletic performance.Frontiers in sports and active living · 2025Pooled it
- metaFun: An analysis pipeline for metagenomic big data with fast and unified functional searches.Gut microbes · 2026Article
- The efficacy of physical exercise interventions on mental health, cognitive function, and ADHD symptoms in children and adolescents with ADHD: an umbrella review.EClinicalMedicine · 2023Article
- Article
- Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions.Foods (Basel, Switzerland) · 2023Review
- Multi-View Design Patterns and Responsive Visualization for Genomics Data.IEEE transactions on visualization and computer graphics · 2023Review
- Contamination detection and microbiome exploration with GRIMER.GigaScience · 2022Article
- Next Generation Sequencing Approaches to Characterize the Respiratory Tract Virome.Microorganisms · 2022Review
- Music of metagenomics-a review of its applications, analysis pipeline, and associated tools.Functional & integrative genomics · 2022Review
- MicrobioSee: A Web-Based Visualization Toolkit for Multi-Omics of Microbiology.Frontiers in genetics · 2022Article
- MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities.Bioinformatics (Oxford, England) · 2021Article
- Article
- Current challenges and best-practice protocols for microbiome analysis.Briefings in bioinformatics · 2021Review
- Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies.Frontiers in microbiology · 2021Review
- SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis.BMC bioinformatics · 2020Article
- Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification.Bioinformatics (Oxford, England) · 2020Article
- Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz.F1000Research · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
Abstract
Large studies profiling microbial communities and their association with healthy or disease phenotypes are now commonplace. Processed data from many of these studies are publicly available but significant effort is required for users to effectively organize, explore and integrate it, limiting the utility of these rich data resources. Effective integrative and interactive visual and statistical tools to analyze many metagenomic samples can greatly increase the value of these data for researchers. We present Metaviz, a tool for interactive exploratory data analysis of annotated microbiome taxonomic community profiles derived from marker gene or whole metagenome shotgun sequencing. Metaviz is uniquely designed to address the challenge of browsing the hierarchical structure of metagenomic data features while rendering visualizations of data values that are dynamically updated in response to user navigation. We use Metaviz to provide the UMD Metagenome Browser web service, allowing users to browse and explore data for more than 7000 microbiomes from published studies. Users can also deploy Metaviz as a web service, or use it to analyze data through the metavizr package to interoperate with state-of-the-art analysis tools available through Bioconductor. Metaviz is free and open source with the code, documentation and tutorials publicly accessible.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.