Evidence map›Paper›PMID 29529088›Full record

ArticlePloS one2018

Combined use of protein biomarkers and network analysis unveils deregulated regulatory circuits in Duchenne muscular dystrophy.

Silvia Parolo, Luca Marchetti, Mario Lauria, Karla Misselbeck, Marie-Pier Scott-Boyer, Laura Caberlotto, Corrado Priami

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
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  14. FOXO3 on the Road to Longevity: Lessons From SNPs and Chromatin Hubs.Computational and structural biotechnology journal · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Silvia ParoloThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.ORCID 0000-0002-3671-5353
Luca MarchettiThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.
Mario LauriaThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.
Karla MisselbeckThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.
Marie-Pier Scott-BoyerThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.
Laura CaberlottoThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.
Corrado PriamiThe Microsoft Research-University of Trento Centre for Computational and Systems Biology (COSBI), Rovereto (TN), Italy.
University of Trento · ITUniversity of Pisa · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although the genetic basis of Duchenne muscular dystrophy has been known for almost thirty years, the cellular and molecular mechanisms characterizing the disease are not completely understood and an efficacious treatment remains to be developed. In this study we analyzed proteomics data obtained with the SomaLogic technology from blood serum of a cohort of patients and matched healthy subjects. We developed a workflow based on biomarker identification and network-based pathway analysis that allowed us to describe different deregulated pathways. In addition to muscle-related functions, we identified other biological processes such as apoptosis, signaling in the immune system and neurotrophin signaling as significantly modulated in patients compared with controls. Moreover, our network-based analysis identified the involvement of FoxO transcription factors as putative regulators of different pathways. On the whole, this study provided a global view of the molecular processes involved in Duchenne muscular dystrophy that are decipherable from serum proteome.

Indexed as

Protein Interaction MappingProtein Interaction MapsProteomeProteomicsCase-Control StudiesFemaleGene Expression RegulationHumansMaleMuscle, SkeletalMuscular Dystrophy, DuchenneSignal TransductionWorkflowProteome

Identifiers

PMID29529088
PMCPMC5846794
OpenAlexW2793008414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.