ArticlePloS one2018
The complete chloroplast genome sequence of Epipremnum aureum and its comparative analysis among eight Araceae species.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed, 50 citations in OpenAlex.
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- Comparative chloroplast genomics, phylogenetic relationships and molecular markers development of Aglaonema commutatum and seven green cultivars of Aglaonema.Scientific reports · 2024Article
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- Extensive characterization of 28 complete chloroplast genomes ofComputational and structural biotechnology journal · 2023Article
- Comparative analyses of Linderniaceae plastomes, with implications for its phylogeny and evolution.Frontiers in plant science · 2023Article
- The complete chloroplast genome sequences of six Hylotelephium species: Comparative genomic analysis and phylogenetic relationships.PloS one · 2023Article
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- Comparative Analysis the Complete Chloroplast Genomes of NineFrontiers in plant science · 2022Article
- Comparative chloroplast genomes and phylogenetic relationships of Aglaonema modestum and five variegated cultivars of Aglaonema.PloS one · 2022Article
- The Ribosomal DNA Loci of the Ancient MonocotFrontiers in plant science · 2022Article
- Highly variable chloroplast genome from two endangered Papaveraceae lithophytesEcology and evolution · 2021Article
- Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea.Scientific reports · 2021Article
- Comparative plastomics of Amaryllidaceae: inverted repeat expansion and the degradation of thePeerJ · 2021Article
- Chloroplast genome sequence of the hybrid variety 'Gagsi', one of the colored calla lilies (Mitochondrial DNA. Part B, Resources · 2020Article
- Complete Chloroplast Genomes of Anthurium huixtlense and Pothos scandens (Pothoideae, Araceae): Unique Inverted Repeat Expansion and Contraction Affect Rate of Evolution.Journal of molecular evolution · 2020Article
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4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Epipremnum aureum is an important foliage plant in the Araceae family. In this study, we have sequenced the complete chloroplast genome of E. aureum by using Illumina Hiseq sequencing platforms. This genome is a double-stranded circular DNA sequence of 164,831 bp that contains 35.8% GC. The two inverted repeats (IRa and IRb; 26,606 bp) are spaced by a small single-copy region (22,868 bp) and a large single-copy region (88,751 bp). The chloroplast genome has 131 (113 unique) functional genes, including 86 (79 unique) protein-coding genes, 37 (30 unique) tRNA genes, and eight (four unique) rRNA genes. Tandem repeats comprise the majority of the 43 long repetitive sequences. In addition, 111 simple sequence repeats are present, with mononucleotides being the most common type and di- and tetranucleotides being infrequent events. Positive selection pressure on rps12 in the E. aureum chloroplast has been demonstrated via synonymous and nonsynonymous substitution rates and selection pressure sites analyses. Ycf15 and infA are pseudogenes in this species. We constructed a Maximum Likelihood phylogenetic tree based on the complete chloroplast genomes of 38 species from 13 families. Those results strongly indicated that E. aureum is positioned as the sister of Colocasia esculenta within the Araceae family. This work may provide information for further study of the molecular phylogenetic relationships within Araceae, as well as molecular markers and breeding novel varieties by chloroplast genetic-transformation of E. aureum in particular.
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