Evidence map›Paper›PMID 29528635›Full record

ArticleJournal of medicinal chemistry2018

Structure Based Design of a Grp94-Selective Inhibitor: Exploiting a Key Residue in Grp94 To Optimize Paralog-Selective Binding.

Nanette L S Que, Vincent M Crowley, Adam S Duerfeldt, Jinbo Zhao, Caitlin N Kent, Brian S J Blagg, Daniel T Gewirth

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 43 citations in OpenAlex.

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  20. Inhibitors of theCells · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nanette L S QueHauptman-Woodward Medical Research Institute , Buffalo , New York 14203 , United States.ORCID 0000-0002-6955-7988
Vincent M CrowleyDepartment of Medicinal Chemistry , The University of Kansas , Lawrence , Kansas 66045 , United States.
Adam S DuerfeldtDepartment of Medicinal Chemistry , The University of Kansas , Lawrence , Kansas 66045 , United States.ORCID 0000-0002-3130-9890
Jinbo ZhaoDepartment of Medicinal Chemistry , The University of Kansas , Lawrence , Kansas 66045 , United States.
Caitlin N KentDepartment of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States.
Brian S J BlaggDepartment of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States.ORCID 0000-0002-6200-3480
Daniel T GewirthHauptman-Woodward Medical Research Institute , Buffalo , New York 14203 , United States.ORCID 0000-0003-2702-3731
University of Kansas · USHauptman-Woodward Medical Research Institute · USUniversity of Notre Dame · US

Funding

Project 3: Structural Basis for grp94 Drug Development and Chaperone FunctionP01CA186866 · NCI · OHIO STATE UNIVERSITY · PI GEWIRTH, DANIEL T · 2015 to 2019
$6.7M
Structure and Regulation of hsp90 ChaperonesR01CA095130 · NCI · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI GEWIRTH, DANIEL T · 2005 to 2015
$2.8M
Grp94-selective inhibitors to treat heredity glaucomaR01EY024232 · NEI · UNIVERSITY OF SOUTH FLORIDA · PI BLAGG, BRIAN S J, DESCHENES, ROBERT J · 2014 to 2017
$1.7M
New paradigms for Hsp90 inhibitionR01CA213566 · NCI · UNIVERSITY OF NOTRE DAME · PI BLAGG, BRIAN S J · 2017 to 2020
$1.4M
The Development of Organelle Specific Hsp90 Isoform-Selective InhibitorsK00CA212467 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CROWLEY, VINCENT · 2018 to 2021
$316k
The Development of Organelle Specific Hsp90 Isoform-Selective InhibitorsF99CA212467 · NCI · UNIVERSITY OF KANSAS LAWRENCE · PI CROWLEY, VINCENT · 2016 to 2017
$63k
NCI NIH HHS F99 CA212467NCI NIH HHS K00 CA212467NCI NIH HHS P01 CA186866NCI NIH HHS R01 CA095130NCI NIH HHS R01 CA213566NEI NIH HHS R01 EY024232
6 · The paper itself

Abstract

Grp94 and Hsp90, the ER and cytoplasmic hsp90 paralogs, share a conserved ATP-binding pocket that has been targeted for therapeutics. Paralog-selective inhibitors may lead to drugs with fewer side effects. Here, we analyzed 1 (BnIm), a benzyl imidazole resorcinylic inhibitor, for its mode of binding. The structures of 1 bound to Hsp90 and Grp94 reveal large conformational changes in Grp94 but not Hsp90 that expose site 2, a binding pocket adjacent to the central ATP cavity that is ordinarily blocked. The Grp94:1 structure reveals a flipped pose of the resorcinylic scaffold that inserts into the exposed site 2. We exploited this flipped binding pose to develop a Grp94-selective derivative of 1. Our structural analysis shows that the ability of the ligand to insert its benzyl imidazole substituent into site 1, a different side pocket off the ATP binding cavity, is the key to exposing site 2 in Grp94.

Indexed as

Adenosine TriphosphateAnimalsCrystallography, X-RayDogsDrug DesignHSP70 Heat-Shock ProteinsHSP90 Heat-Shock ProteinsHumansMembrane ProteinsModels, MolecularMolecular ConformationProtein BindingStructure-Activity RelationshipAdenosine Triphosphateglucose-regulated proteinsHSP70 Heat-Shock ProteinsHSP90 Heat-Shock ProteinsMembrane Proteins

Identifiers

PMID29528635
PMCPMC5897183
OpenAlexW2790774674

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.