Evidence map›Paper›PMID 29528287›Full record

ArticleeLife2018

ICE1 promotes the link between splicing and nonsense-mediated mRNA decay.

Thomas D Baird, Ken Chih-Chien Cheng, Yu-Chi Chen, Eugen Buehler, Scott E Martin, James Inglese, J Robert Hogg

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Thomas D BairdBiochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United States.ORCID https://orcid.org/0000-0002-0280-9984
Ken Chih-Chien ChengNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, United States.
Yu-Chi ChenNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, United States.
Eugen BuehlerNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, United States.
Scott E MartinNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, United States.
James IngleseNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, United States.ORCID http://orcid.org/0000-0002-7332-5717
J Robert HoggBiochemistry and Biophysics Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United States.ORCID http://orcid.org/0000-0001-5729-5135

Funding

Mechanisms of nonsense-mediated mRNA decay target selectionZIAHL006158 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI HOGG, J ROBERT · 2012 to 2025
$17.9M
Phenotypic Assay Design and Development for Rare and Neglected DiseasesZIATR000052 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI INGLESE, JAMES · 2015 to 2025
$3.7M
NCATS NIH HHS Intramural Research ProgramNHLBI NIH HHS Intramural Research Program
6 · The paper itself

Abstract

The nonsense-mediated mRNA decay (NMD) pathway detects aberrant transcripts containing premature termination codons (PTCs) and regulates expression of 5-10% of non-aberrant human mRNAs. To date, most proteins involved in NMD have been identified by genetic screens in model organisms; however, the increased complexity of gene expression regulation in human cells suggests that additional proteins may participate in the human NMD pathway. To identify proteins required for NMD, we performed a genome-wide RNAi screen against >21,000 genes. Canonical members of the NMD pathway were highly enriched as top hits in the siRNA screen, along with numerous candidate NMD factors, including the conserved ICE1/KIAA0947 protein. RNAseq studies reveal that depletion of ICE1 globally enhances accumulation and stability of NMD-target mRNAs. Further, our data suggest that ICE1 uses a putative MIF4G domain to interact with exon junction complex (EJC) proteins and promotes the association of the NMD protein UPF3B with the EJC.

Indexed as

Carrier ProteinsCodon, NonsenseExonsGene Expression RegulationHumansNonsense Mediated mRNA DecayProtein BiosynthesisProtein DomainsRibosomal ProteinsRNA-Binding ProteinsRNA InterferenceRNA SplicingCarrier ProteinsCodon, NonsenseICE1 protein, humanRibosomal ProteinsRNA-Binding ProteinsUPF3B protein, humanbiochemistrychemical biologychromosomesexon junction complexgeneshumanICE1nonsense-mediated mRNA decayRNA quality controlsiRNA screenUPF3B

Identifiers

PMID29528287
PMCPMC5896957

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.