Evidence map›Paper›PMID 29527417›Full record

ArticlePeerJ2018

Global analysis of A-to-I RNA editing reveals association with common disease variants.

Oscar Franzén, Raili Ermel, Katyayani Sukhavasi, Rajeev Jain, Anamika Jain, Christer Betsholtz, Chiara Giannarelli, Jason C Kovacic, Arno Ruusalepp, Josefin Skogsberg and 3 more

Abstract read
In one paragraph

Article in PeerJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
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  5. Article
  6. Epitranscriptomics of cardiovascular diseases (Review).International journal of molecular medicine · 2022
    Review
  7. Article
  8. Article
  9. Review
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Oscar FranzénIntegrated Cardio Metabolic Centre, Karolinska Institutet, Huddinge, Sweden.
Raili Ermel *Department of Cardiac Surgery, Tartu University Hospital, Tartu, Estonia.
Katyayani Sukhavasi *Department of Pathophysiology, Institute of Biomedicine and Translational Medicine, University of Tartu, Tartu, Estonia.
Rajeev JainDepartment of Pathophysiology, Institute of Biomedicine and Translational Medicine, University of Tartu, Tartu, Estonia.
Anamika JainDepartment of Pathophysiology, Institute of Biomedicine and Translational Medicine, University of Tartu, Tartu, Estonia.
Christer BetsholtzIntegrated Cardio Metabolic Centre, Karolinska Institutet, Huddinge, Sweden.
Chiara GiannarelliCardiovascular Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Jason C KovacicCardiovascular Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Arno RuusaleppDepartment of Cardiac Surgery, Tartu University Hospital, Tartu, Estonia.
Josefin SkogsbergDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Solna, Sweden.
Ke HaoInstitute of Genomics and Multiscale Biology, Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Eric E SchadtInstitute of Genomics and Multiscale Biology, Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States of America.
Johan L M BjörkegrenIntegrated Cardio Metabolic Centre, Karolinska Institutet, Huddinge, Sweden.

Funding

Toward Diagnostics and Therapies of Molecular Subcategories of CADR01HL125863 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BJORKEGREN, JOHAN M · 2015 to 2018
$3.2M
Toward Therapeutic Manipulation of Endothelial to Mesenchymal TransitionR01HL130423 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ISHIKAWA, KIYOTAKE, KOVACIC, JASON CIRIL · 2016 to 2020
$2.1M
Role of alternatively spliced Tissue Factor in atherosclerosisK23HL111339 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GIANNARELLI, CHIARA · 2013 to 2017
$782k
Network-driven drug repurposing approaches to treat coronary artery diseaseR21TR001739 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BJORKEGREN, JOHAN M, GIANNARELLI, CHIARA · 2016 to 2017
$678k
Single-cell-driven drug repositioning approaches to target inflammation in atherosclerosisUH2TR002067 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GIANNARELLI, CHIARA · 2017 to 2018
$678k
Dissecting the cellular and molecular immune interactions in human atherosclerosisR03HL135289 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GIANNARELLI, CHIARA · 2016 to 2017
$170k
NCATS NIH HHS R21 TR001739NCATS NIH HHS UH2 TR002067NHLBI NIH HHS K23 HL111339NHLBI NIH HHS R01 HL125863NHLBI NIH HHS R01 HL130423NHLBI NIH HHS R03 HL135289
6 · The paper itself

Abstract

RNA editing modifies transcripts and may alter their regulation or function. In humans, the most common modification is adenosine to inosine (A-to-I). We examined the global characteristics of RNA editing in 4,301 human tissue samples. More than 1.6 million A-to-I edits were identified in 62% of all protein-coding transcripts. mRNA recoding was extremely rare; only 11 novel recoding sites were uncovered. Thirty single nucleotide polymorphisms from genome-wide association studies were associated with RNA editing; one that influences type 2 diabetes (rs2028299) was associated with editing in

Indexed as

BioinformaticsBiostatisticsGene expressionQuantitative trait lociRNA editingRNA-seq

Identifiers

PMID29527417
PMCPMC5844249

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.