Evidence map›Paper›PMID 29527236›Full record

ArticleBiotechnology for biofuels2018

Uncovering the molecular mechanisms of lignocellulose digestion in shipworms.

Federico Sabbadin, Giovanna Pesante, Luisa Elias, Katrin Besser, Yi Li, Clare Steele-King, Meg Stark, Deborah A Rathbone, Adam A Dowle, Rachel Bates and 4 more

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 85 citations in OpenAlex.

  1. Review
  2. Article
  3. Complete genome sequences of two shipworm endosymbiont strains,Microbiology resource announcements · 2025
    Article
  4. Article
  5. Article
  6. Membrane vesicles can contribute to cellulose degradation bybioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Federico Sabbadin *1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Giovanna Pesante *1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Luisa Elias1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Katrin Besser1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Yi Li1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Clare Steele-King1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Meg Stark2Bioscience Technology Facility, Department of Biology, University of York, Heslington, York, YO10 5DD UK.
Deborah A RathboneBiorenewables Development Centre, 1 Hassacarr Close, Chessingham Park, Dunnington, York, YO19 5SN UK.
Adam A Dowle2Bioscience Technology Facility, Department of Biology, University of York, Heslington, York, YO10 5DD UK.
Rachel Bates2Bioscience Technology Facility, Department of Biology, University of York, Heslington, York, YO10 5DD UK.
J Reuben Shipway4Marine Science Center, Northeastern University, Nahant, MA 01908 USA.
Simon M Cragg5School of Biological Sciences, University of Portsmouth, King Henry Building, King Henry 1st St, Portsmouth, PO1 2DY UK.
Neil C Bruce1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
Simon J McQueen-Mason1Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD UK.
University of York · GBNortheastern University · USUniversity of Portsmouth · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G016208/1Biotechnology and Biological Sciences Research Council BB/H531543/1
6 · The paper itself

Abstract

Lignocellulose forms the structural framework of woody plant biomass and represents the most abundant carbon source in the biosphere. Turnover of woody biomass is a critical component of the global carbon cycle, and the enzymes involved are of increasing industrial importance as industry moves away from fossil fuels to renewable carbon resources. Shipworms are marine bivalve molluscs that digest wood and play a key role in global carbon cycling by processing plant biomass in the oceans. Previous studies suggest that wood digestion in shipworms is dominated by enzymes produced by endosymbiotic bacteria found in the animal's gills, while little is known about the identity and function of endogenous enzymes produced by shipworms. Using a combination of meta-transcriptomic, proteomic, imaging and biochemical analyses, we reveal a complex digestive system dominated by uncharacterized enzymes that are secreted by a specialized digestive gland and that accumulate in the cecum, where wood digestion occurs. Using a combination of transcriptomics, proteomics, and microscopy, we show that the digestive proteome of the shipworm

Identifiers

PMID29527236
PMCPMC5840672
OpenAlexW2785444043

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.