Evidence map›Paper›PMID 29524328›Full record

ArticleChembiochem : a European journal of chemical biology2018

Similar but Not the Same: First Kinetic and Structural Analyses of a Methanol Dehydrogenase Containing a Europium Ion in the Active Site.

Bérénice Jahn, Arjan Pol, Henning Lumpe, Thomas R M Barends, Andreas Dietl, Carmen Hogendoorn, Huub J M Op den Camp, Lena J Daumann

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 93 citations in OpenAlex.

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  10. A De Novo Metalloenzyme for Cerium Photoredox Catalysis.Journal of the American Chemical Society · 2024
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  17. Article
  18. Lanthanide-Dependent Methanol Metabolism of aInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Hyperaccumulation of Gadolinium byFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Bérénice JahnLudwig-Maximilians-Universität München, Department Chemie, Butenandtstr. 5-13, 81377, München, Germany.
Arjan PolDepartment of Microbiology, Institute of Wetland and Water Research, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
Henning LumpeLudwig-Maximilians-Universität München, Department Chemie, Butenandtstr. 5-13, 81377, München, Germany.
Thomas R M BarendsDepartment of Biomolecular Mechanisms, Max-Planck Institute for Medical Research, Jahnstrasse 29, 69120, Heidelberg, Germany.
Andreas DietlDepartment of Biomolecular Mechanisms, Max-Planck Institute for Medical Research, Jahnstrasse 29, 69120, Heidelberg, Germany.
Carmen HogendoornDepartment of Microbiology, Institute of Wetland and Water Research, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.
Huub J M Op den CampDepartment of Microbiology, Institute of Wetland and Water Research, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-1990-9030
Lena J DaumannLudwig-Maximilians-Universität München, Department Chemie, Butenandtstr. 5-13, 81377, München, Germany.ORCID http://orcid.org/0000-0003-2197-136X
Ludwig-Maximilians-Universität München · DERadboud University Nijmegen · NLMax Planck Institute for Medical Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since the discovery of the biological relevance of rare earth elements (REEs) for numerous different bacteria, questions concerning the advantages of REEs in the active sites of methanol dehydrogenases (MDHs) over calcium(II) and of why bacteria prefer light REEs have been a subject of debate. Here we report the cultivation and purification of the strictly REE-dependent methanotrophic bacterium Methylacidiphilum fumariolicum SolV with europium(III), as well as structural and kinetic analyses of the first methanol dehydrogenase incorporating Eu in the active site. Crystal structure determination of the Eu-MDH demonstrated that overall no major structural changes were induced by conversion to this REE. Circular dichroism (CD) measurements were used to determine optimal conditions for kinetic assays, whereas inductively coupled plasma mass spectrometry (ICP-MS) showed 70 % incorporation of Eu in the enzyme. Our studies explain why bacterial growth of SolV in the presence of Eu

Indexed as

europiumlanthanidesmethanol dehydrogenasesoxidoreductasesrare earths

Identifiers

PMID29524328
PMCPMC6100108
OpenAlexW2791939650

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.