Evidence map›Paper›PMID 29524012›Full record

ArticleFunctional & integrative genomics2018

The SbcC and SbcD homologs of the cyanobacterium Anabaena sp. strain PCC7120 (Alr3988 and All4463) contribute independently to DNA repair.

Sarita Pandey, Anurag Kirti, Arvind Kumar, Hema Rajaram

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In one paragraph

Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sarita PandeyMolecular Biology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400085, India.
Anurag KirtiMolecular Biology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400085, India.
Arvind KumarMolecular Biology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400085, India.
Hema RajaramMolecular Biology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400085, India. hemaraj@barc.gov.in.
Bhabha Atomic Research Centre · INHomi Bhabha National Institute · IN

Funding

Science and Engineering Research Board Start up research grant, YSS/2015/000306
6 · The paper itself

Abstract

The ubiquitous SbcCD exonuclease complex has been shown to perform an important role in DNA repair across prokaryotes and eukaryotes. However, they have remained uncharacterized in the ancient and stress-tolerant cyanobacteria. In the cyanobacterium Anabaena sp. strain PCC7120, SbcC and SbcD homologs, defined on the basis of the presence of corresponding functional domains, are annotated as hypothetical proteins, namely Alr3988 and All4463 respectively. Unlike the presence of sbcC and sbcD genes in a bicistronic operon in most organisms, these genes were distantly placed on the chromosome in Anabaena, and found to be negatively regulated by LexA. Both the genes were found to be essential in Anabaena as the individual deletion mutants were non-viable. On the other hand, the proteins could be individually overexpressed in Anabaena with no effect on normal cell physiology. However, they contributed positively to enhance the tolerance to different DNA damage-inducing stresses, such as mitomycin C and UV- and γ-radiation. This indicated that the two proteins, at least when overexpressed, could function independently and mitigate the damage caused due to the formation of DNA adducts and single- and double-strand breaks in Anabaena. This is the first report on possible independent in vivo functioning of SbcC and SbcD homologs in any bacteria, and the first effort to functionally characterize the proteins in any cyanobacteria.

Indexed as

DNA RepairAnabaenaBacterial ProteinsDNA AdductsDNA Breaks, Double-StrandedDNA Breaks, Single-StrandedExodeoxyribonucleasesGamma RaysMitomycinUltraviolet RaysBacterial ProteinsDNA AdductsExodeoxyribonucleasesMitomycinCyanobacteriaDNA damageDNA repairRadioresistanceSbcCSbcD

Identifiers

PMID29524012
OpenAlexW2793222283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.